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Weaving the Data Strands Together

Peering Through Polar Ice - Fri, 04/26/2013 - 20:42
Full moon rising over Kangerlussuag at the start of the April 26th Holiday. (Image M. Turrin)

Full moon rising over Kangerlussuag at the start of the April 26th Holiday. (Photo: M. Turrin)

Holidays vary around the world with their dates and traditions, so it should have come as no surprise that we would find a holiday in our scheduled Greenland visit. Today, April 26, is “Store Bededag,” which translates as “Great Prayer Day,” brought by the Danish to Greenland when they ventured to this island from their homeland. Kangerlussuaq, and other populated areas of Greenland, are a mix of Danish and Greenlandic in people, language, food and tradition. The holiday does not stop our survey flights today, but a snow storm with low-visibility has brought us to the ground. In the end it is a good day to focus on data.

Prior to today we have completed several flights, each with a tightly designed purpose, and there is plenty of data to be gone through. With our newly designed system, each instrument must be tested individually for operational capability and range, and then assessed for the enhancement that comes from aligning the results with the data from the other instrumentation. Calibration runs are also required for some of the instruments. In the end, each flight ends with a stack of data disks which need to be reviewed in detail.

The start of the Sanderstrom Fjord ice tongue (Image M. Turrin)

The Sondrestrom Fjord ice tongue is a target area for the cameras on this Icepod flight. (Photo: M. Turrin)

Each flight has a list of priorities designed around specific target locations and weather availability. Yesterday our target instruments were the visible and infrared cameras, the laser system and the deep ice radar system. For the two cameras we would fly down Sondrestrom Fjord building a set of matching images.

Bobcat camera showing where fast moving ice has compressed into tight ridges. (Image R. Bell)

Bobcat camera image showing where fast moving ice has compressed into tight crumpled ridges. (Photo: R. Bell)

The Bobcat, our visible image camera, showed a wide swath of surface imagery, noting where fast moving ice had crumpled into bands of ridges, as well as where it had thinned, cracked, and showed evidence of refrozen melt water streams.

The Infrared Camera operates at a higher frame capture than the Bobcat, and collects temperature differences from the places where the ice has thinned or opened. The colder the surface, the blacker the infrared image; warmer surfaces show as white. The tongue of the fjord is an excellent testing area for this.

 

The infrared camera will collect temperature differences at the floating ice tongue. (Image M. Turrin)

The infrared camera will collect temperature differences where the floating ice tongue has broken into sections of floating ice that look like confetti strewn in the water. (Photo: M. Turrin)

The Deep Ice Radar was being fine-tuned on this flight. Following the first Greenland test flight, the system was adjusted and the team was anxious to see the results. We headed up Russell Glacier to get to enough ice depth to receive the radar returns, but with the weather worsening and the winds kicking up, we didn’t go any further than needed.

Steep faced cliffs are carved by glacial ice. Ice stretched down this rock face in thin ribbons. (Image M. Turrin)

Steep faced Greenlandic cliffs are carved by glacial ice. Ice ribbons stretch down this rock face, carving deeper ridges that may some day be waterfalls. In order to get to the deeper ice, we needed to fly away from the mountain ring that circles Greenland like a pointed crown. (Photo: M. Turrin)

 

LIDAR calibrations (shown in the monitor) can be like riding a roller coaster - some love it and some don't! (Image M. Turrin

LIDAR calibrations (shown in the monitor) can be like riding a roller coaster – some love it and some don’t! (Photo: M. Turrin

The LIDAR (Laser Imaging Detection And Ranging) testing was our last test of the day. Designed to give us surface elevation, with repeat use it can show change in ice surface elevation over time. In order to show small change in ice elevation, a very tight accuracy is needed, on the order of 10 cms. The LIDAR calibration was designed as a gridded pattern of 4 by 4 lines flown at 170 knots of air speed. Calibration flights can be bumpy and twisty, as the plane will roll with the turns needed to create the pattern. The 20-knot headwinds cause some additional turbulence, but the full eight passes are completed before a return to the airfield.

For more on Icepod: http://www.ldeo.columbia.edu/icepod

An Ice Landing

Peering Through Polar Ice - Thu, 04/25/2013 - 06:18
up a GPS at Kangerlussuaq airstrip. L-R Nick Frearson, Margie Turrin, Kirsty Tinto, LDEO (Image R. Bell)

Setting up a GPS at Kangerlussuaq airstrip. L-R Nick Frearson, Margie Turrin, Kirsty Tinto, LDEO (Photo: R. Bell)

Half of the people lining the walls of the Kangerlussuaq International Science Support (KISS) building are waiting to go north to the top of the ice sheet at Summit Camp, and the other half are waiting to go east to the top of the ice sheet at Raven Camp. The science and support teams have been ready and waiting for several days now, hoping for a break in the weather up on the ice sheet.

Ice sheets are large enough that they can create their own weather. Large mountains of ice several miles thick, they stretch into higher elevations and gather the clouds around them. The sunny but cold weather (-21 to -9 degrees C) is a tease to the group ready each morning and waiting for clearance, day after day.

Kangerlussuaq, Greenland weather (credit weatherchannel.com)

Kangerlussuaq, Greenland weather (credit weatherchannel.com)

For the Icepod team the waiting is just as difficult. A series of flight options have been drafted, but with the target of getting equipment and teams out to the camps, our flights are shifted for the moment to “piggybacks” with other flight missions. Piggybacks are actually an excellent opportunity for the project to show how the pod might work once the full system is tested and ready for science use. The project design is for the pod to be fully integrated into the guard’s NSF Operation Deep Freeze mission of supporting science in the polar-regions. In the future, as the LC130’s deliver cargo and personnel to the polar science camps, the pod can be switched on by the loadmaster to gather data as the aircraft transits.

The NYANG delivering cargo to Raven Camp, Greenland (Image R. Bell)

The NYANG delivering cargo to Raven Camp, Greenland (Photo: R. Bell)

Word comes mid-morning that the first flight of carpenters and materials will head to Raven Camp.  There is not room for us but we are set for the second flight. The runway at Raven Camp is a groomed strip on the ice sheet, so the pod will make its first ice landing.

The first morning flight and ice landing go well for the pod, but one aircraft engine is causing some concern. The aircraft is looked over and the engine is cleared for us to take off late in the day with the second cargo delivery. We will fly out at high altitude before we stop at camp to install a temporary GPS for an Icepod GPS calibration. A forklift is used to load two large pallets of cargo onto the metal tracks that run the length of the aircraft and that assist the quick release of the supplies. The delivery at Raven Camp will be a “combat offload” with the cargo unstrapped and the plane moving forward on the ice so that the load slides out the back.The pod team is loaded and ready to head out.

Cargo Combat Offload

“Combat Offload at Camp Raven April 23, 2013 with the Icepod project. (credit Matt Patmore)”

 

Leaving the plane to set up the GPS (Image R. Bell)

Leaving the plane to set up the GPS (Photo: R. Bell)

With the cargo delivered, several of us exit the aircraft to install a GPS base station on the ice sheet so that the pod can complete its GPS calibration. A cloverleaf design will be flown with 20 to 30 degree turns closing the loops and straight lines between, while the GPS tracks the changes in direction and the movement in the air. In the pod design an array of GPS’s were mounted, one on the aircraft hatch and several on the pod itself, in order to determine the best location for “seeing” the satellites and yet be close to the instruments. The GPS is critical to all the data, used to tie back to a specific point on Earth. One station is set up back at Kangerlussuaq, and the second set up at Raven Camp will provide us a closure point so that we can tie together and adjust all the points in between.  

 

Nick Frearson and Kirsty Tinto of Lamont-Doherty set up the GPS base station in front of Dye 2, Raven Camp, Kangerlussuaq (Image M. Turrin)

Nick Frearson and Kirsty Tinto of Lamont-Doherty set up the GPS base station in front of Dye 2, Raven Camp, Kangerlussuaq (Photo: M. Turrin)

The station is set to operate. The team returns to the aircraft from the ice sheet and the calibration is flown. A follow-up flight to Raven Camp over the next few days will retrieve the GPS station. Once completed, the team heads for home over the ice sheet for a 9 p.m. touchdown. Although the aircraft loses an engine in the return transit, the day is determined a success with the completed piggyback flights, ice ramp landings and the GPS instrument calibration.

GPS installed in front of Dye 2, Raven Camp.(Image M. Turrin)

GPS installed in front of Dye 2, Raven Camp.(Photo: M. Turrin)

For More on Icepod: http://www.ldeo.columbia.edu/icepod

 

Raven Camp

Peering Through Polar Ice - Mon, 04/22/2013 - 17:31
Raven Hill, also known as Black Hill, rises above the town of Kangerlussuaq.

Raven Hill, also known as Black Hill, rises above the town of Kangerlussuaq, Greenland. (Image M. Turrin)

Ravens dominate the Kangerlussuaq landscape. Perhaps it is their deep ebony color and solid frame, or perhaps it is the white stillness of winter with little else but humans moving about, but whatever the cause the ravens are a recognized presence. The towering black hill rising above the glacially carved fjord is aptly named Raven Hill and boasts a steady circling of the mythical black winged creatures calling out in their raspy voices. With ravens being much a part of the region, it seems only fitting that our first flight would be to Raven Camp in search of deep enough ice to test the Deep Ice Radar system or “D-Ice” as it is referred to.

Flight planning (L-R) Kirsty Tinto, LDEO,  Maj. Josh Hicks, NYANG, Robin Bell, LDEO.

Flight planning (L-R) Kirsty Tinto, LDEO, Maj. Josh Hicks, NYANG, Robin Bell, LDEO. (Photo: M. Turrin)

The day starts out a bit hazy and the weather is forecast to deteriorate during the day. Most flights have been cancelled, but the Icepod team has been cleared for flight if we can manage a departure by noon and return to base by 2 p.m. Sensor and equipment adjustments keep the team busy until mid morning, and weather maps are continually being consulted for updates. Several times the planning team reconfigures the flight lines looking for the optimal plan to maximize the testing of the equipment with available time and weather considerations. Our NYANG partners are as anxious for the flight to go as the Icepod team, but if there are any weather concerns, caution must override enthusiasm. With the camp being at a higher elevation than Kangerlussuaq, the weather can vary considerably from the base.

The edge of the ice sheet is just visible flying towards Raven Camp in the south central section of Greenland.

The edge of the ice sheet comes into view through the misty haze as we fly toward Raven Camp in the south central section of Greenland. (Photo: M. Turrin)

Raven Camp lies at close to 2000 meters (~6800 ft.) elevation, where the glacial ice is approximately 1800 meters thick. “Noise” in the radar system drops after 1200-1500 meters of ice thickness, so although the weather is poor, we are hoping to get to this ice thickness to run a first real test of the D-Ice. Unlike our optical systems, the radar is not affected by poor visibility, so this is the right decision for the flight today. The plane is loaded with cold weather emergency gear, standard protocol when flying in the polar regions, and we take off down Sondrestrom fjord, making the noon flight departure time.

Kangerlussuaq lies at the mouth of the Sondrestrom Fjord in southwest Greenland.

Kangerlussuaq lies at the mouth of the Sondrestrom Fjord in southwest Greenland. (Photo: M. Turrin)

This series of flights is designed for instrument testing, so the science team is troubleshooting as they fly. Every instrument is tested in the short two-hour flight, and procedures are reviewed. The sound in the aircraft is deafening and earplugs are mandatory, which makes communicating challenging, but communicating is an essential part of the testing.

(L-R) Lamont's Scott Brown, Nick Frearson, Robin Bell discuss the camera function during flight.

(L-R) Lamont’s Scott Brown, Nick Frearson, Robin Bell huddle to discuss the camera function over the noise of the aircraft during flight. (Photo: M. Turrin)

The plane reached the edge of the deep ice and the aircraft lowers to a survey elevation of 900 meters (3000 ft.) above the surface flying along the ice contour. The radar system is up and recording. In too short a time, the plane has reached Raven Camp, but the poor weather conditions limit our ability to see the camp below. The aircraft turns and we head back to base. In our post-flight debrief, reviewing data takes a top priority for tomorrow. With a limited number of flight hours available, every flight is precious, so we need to be sure that assessment and adjustment is made to the instruments as we go.

For more on this program see: http://www.ldeo.columbia.edu/icepod

Greenland Welcomes Icepod and the 2013 Science Season

Peering Through Polar Ice - Sat, 04/20/2013 - 20:27
Greenland’s west coast is lined with ice-topped mountains reaching up to touch the clouds. (photo M. Turrin)

Greenland’s west coast is lined with ice-topped mountains reaching up to touch the clouds. (photo M. Turrin)

00 AM 'shuttle' to collect science teams and their baggage for the Greenland Science Season.

The New York Air National Guard runs a 5:00 AM ‘shuttle’ to collect science teams and their baggage for the Greenland Science Season. (photo M. Turrin)

Icepod joined the first large wave of science teams headed to Greenland via the NYANG LC130 transport system. Four LC130 aircraft were packed to bursting with pallets of equipment, supplies and science teams anxious to get to their designated research locations. Planes one and three were designated for cargo load, plane two would carry the bulk of the science personnel, including half the Icepod team, and plane four would carry Icepod with its skeletal engineering support team. 5:00 a.m. pick-ups for the science members set up the planes for staggered departures every 30 minutes starting at 8:00 a.m. With a flight time of seven hours from Schenectady NY to Kangerlussuaq Greenland, an early departure facilitates moving through customs and getting settled with the science support staff that awaits the group in Greenland.

LC130 Line Up prepares to head to Greenland with the IcePod visible in the front of the line. (Photo R. Bell)

LC130 line up in preparation to head to Greenland with the IcePod visible at the front of the line. (Photo R. Bell)

All the aircraft were packed from end to end with either cargo or personnel. While we waited for the pallets of cargo to be loaded onto the planes the science teams’ discussion focused on how Greenland’s ice will be dissected and examined in the upcoming season. One group will look at ice surface processes using ground penetrating radar and shallow ice cores starting at the Dye 2 location, another will drop into the high elevation Summit camp to start an overland traverse examining the ice (although we learned that nighttime temperatures are running at -50 degrees C, a bit too low currently for set up). A third group will examine the firn layer (that section in the ice that is just starting to compress) over Jakonbshavn glacier, and the Icepod team will be doing their first set of instrument test flights in polar conditions looking at the ice from the bed up to the ice surface.

Approaching Goose Bay to refuel. (Photo M. Turrin)

Approaching Goose Bay to refuel. (Photo M. Turrin)

The science personnel were finally loaded into Plane two, which had been divided across the middle of the main cabin, to accommodate cargo aft and science teams foreward packed knee to knee in two sets of facing rows.  With this heavy load the aircraft would need to stop to refuel in Goose Bay, in Labrador, Newfoundland, Canada. Goose Bay Air Base, affectionately known by many as “The Goose”, was once home to Strategic Air Command’s 95th Strategic Wing. The ice cream served to the visitors of the airfield has become part of the travel lore of the teams en route to Greenland, so by the time the wheels touched down, everyone’s thoughts had moved from polar ice to ice cream. Two baskets full of assorted Good Humor truck style ice cream were quickly dispensed and we were back up in the air and underway for the last half of the journey.

 

 

//www.strategic-air-command.com/bases/Goose_Bay_AFB.htm)

Goose Bay Air Base provides a refueling and emergency stopping location for aircraft, in fact a United aircraft was undergoing emergency repairs when we stopped through. (image from http://www.strategic-air-command.com/bases/Goose_Bay_AFB.htm)

When the west coast of Greenland came into view the sun was just peaking through the clouds lying low along the tops of the coastal mountains. The shadowy ridgeline just visible through the mist was a welcome sight after seven hours of flight.  Tomorrow will be a day of setting up base stations and reviewing some of the transit data, then the Icepod project will launch into its first set of Greenland test flights.

The west coast Greenland mountains tip through the clouds as the sun breaks along the ridgeline. (Photo M. Turrin)

The west coast Greenland mountains tip through the clouds as the sun breaks along the ridgeline. (Photo M. Turrin)

For more information on the IcePod project: http:www.ldeo.columbia.edu/icepod

Visual Skateboarding

The Broadleaf Papers - Fri, 04/05/2013 - 18:57

By Ana Camila Gonzalez

 

“You can do math on excel?” I ask. I immediately imagine a face-palm response, but Dario, one of my advisors, is nice enough to hide it. I’ve collected tree core samples, I’ve prepared them and cross-dated them. Now what?

Oh, right. The Science.

 N. Pederson

Science! Photo: N. Pederson

 

I guess I never really understood there could be so much involved in answering a question. When I imagine the scientific method I’ve learned since the sixth grade, I somehow imagine a question that can be answered with a yes or no. If I let go of this apple, will it fall to the ground? Hypothesis: yes, it will. Experiment: yes, it does. Conclusion: yes, it will. To the credit of my high school science teachers, it’s not that they didn’t make it perfectly clear that the why and the how are just as important as the yes or the no. I just couldn’t imagine that you’d have to explain why the apple falls with four different figures: haven’t you seen an apple fall too?

Dario is helping me understand how to analyze the data from the black oak samples I have already been working with for some time now. I know these samples. Or at least I think I know these samples. I’m learning there’s more to know about them than I initially thought.

We’re analyzing the climate response, which proves to be exactly what it sounds like. We have recorded measurements of climate (precipitation records, temperature records) and a proxy for tree growth (our ring width measurements!) and by comparing those we can see how a tree population responds to a range of climactic conditions. Alright. I can do this. I’ve made graphs before.

 

So we’re going to find correlations,” says Dario.

Click on an empty cell.” I start to make a scatter plot; I think what we’re going to do is look at the slope of a line of best fit.

So we’re going to see if the correlation is positive or negative?” I ask.

Yes, but we also have to see if the correlations are significant.” Isn’t any correlation higher than a zero significant? They’re showing a relationship. 

Dario continues, “Any correlation above a 0.2 or so is significant for the hundred years of ring width and climate that you have for this analysis.” I learn how to use the =correl function to compare the populations to temperature and I have to say I’m disappointed. I thought 0.2 sounded so low, but some of my data is showing a much lower correlation, and the data that is significant only ranges from about really close to 0.2 to 0.38 or so. I wanted to see a 0.5 correlation like I did between tree samples within a species as I was cross-dating. Comparing precipitation to ring width gives me slightly higher correlations, a few in the 0.3 range, but I’m still feeling underwhelmed.

No, but it’s still significant! It matters!” Dario tells me to make a scatter plot comparing precipitation to ring-width measurements over time at both sites. At first it looks like a ball of yarn, but as I mask the plot out I can see why those 0.3 correlations are significant. I follow each curve, visually skateboarding up and down the peaks and valleys and noticing that I’m going up and down a lot of very similar hills as I do so. What’s most rewarding is looking for years I know are drought years (1966 and 1954 were big droughts) and seeing relatively low measures of precipitation and ring width during those years. I knew while I was cross-dating that those years were important when I saw how small the rings were, but now I can prove it. Like the apple falling, I can’t just say that because I see the rings are small those were dry years. I have to compare it to precipitation records, temperature records, and, dare I say it, the Palmer Drought Severity Index (I have to admit I don’t entirely understand the mechanics behind the index, but I understand that dryness is a composite of precipitation and temperature forcings).

Dario, over multiple days, teaches me a few more nuances of Excel and helps me understand the ARSTAN program and how we use it to make our ring-width measurements more effective as proxies for tree growth. He mentions this would all be easier if I knew how to use R. I make a mental note: learning R is the next step. If I thought that was scary, now I have to put this information on a poster. That real people will see. At a real conference.

Neil shows me a few poster examples, and the message is clear. Show your data instead of describing it in words. That also means I’ll have to explain my data by actually… talking… about it. Gulp. The North East Natural History Conference is next weekend, but I feel like I’m ready. I understand the why and how after analyzing my data. At least I understand it enough to give an answer better than yes or no.

 

__________________

 

Ana Camila Gonzalez is a first-year environmental science and creative writing student at Columbia University at the Tree Ring Laboratory of Lamont-Doherty Earth Observatory. She will be blogging on the process of tree-ring analysis, from field work to scientific presentations.

I’ll Go on a Cross-Date if You Show Me Some Rings

The Broadleaf Papers - Thu, 03/28/2013 - 20:04

By Ana Camila Gonzalez

 

Ever since I’ve started learning to cross-date tree core samples, I’ve learned I have a type. I prefer my tree cores to be black oaks, middle-aged, with some nice big rings to show me. Alright, fine, I can deal with some smaller rings every now and then. As long as they’re some nice marker rings.

Unfortunately, the trees don’t seem to be trying to impress me.

 AC Gonzalez and N. Pederson

Sensitive black oak rings, showing the 1960s drought (faint bands of wood between the two dots on the right side of this image), from eastern NY State. Image: AC Gonzalez and N. Pederson

I was told on a fifth grade field trip that you could tell the age of a tree by chopping it down and counting from the ring on the outside, which represents the current year, to the inside ring, which represents the year it started to grow. I’m coming to learn at the Tree Ring Laboratory of Lamont-Doherty Earth Observatory that there are a few problems with that statement.

Primarily, you don’t have to chop the tree down. I learned while doing fieldwork that coring a tree does not damage it at all. More importantly however, you can’t always find the exact age of a tree by simply counting the rings backwards. One has to verify the years you assigned to each ring against other samples, and, occasionally, against known climatic or ecological events. Sometimes a ring can be missing, possibly from either a very dry year or insect defoliation that causes a lack of growth on the side of the tree you’re looking at. Sometimes a ring is there, but it’s tiny; so small you need a microscope to see it: a micro ring. And this is where cross dating comes in.

 N. Pederson

A large, Y-shaped black oak in eastern NY State. Photo: N. Pederson.

 

I sit down to cross date my first batch of samples, black oaks from 2003, with rings I can see without using a microscope. I use the microscope regardless, of course, because sometimes what looks like a ring from far away can actually be a false ring: an “extra” late wood growth caused by an early freeze, early warming, or some disruption to ‘normal’  seasonal weather. The microscope helps me see whether these bands have defined edges or seem to fade, and I’ll know that only the truly defined ones are rings.

I seem to be lucky, however, as none of the Black Oaks seem to have any false rings. I’m actually eager to find some missing rings and micro rings, but I don’t find any of those either; missing rings in oak are so rare that you’ll likely be able to plant your own oak forest and watch it grow to maturity before you find one. This is so easy, I think. I feel like I have it in the bag.

I finish measuring the rings on my samples and labeling them with the years I assigned hypothetically to each ring from my cross dating. Now I’m ready to run the measurements through COFECHA, a program that gives me the correlations between individual samples and finally the correlation between all of the samples. When I first run the program with every sample, I’m told something between 0.5 and 0.6 is the expected correlation for ‘good’ black oaks (in other words, there is a 50 to 60 percent chance that given the ring-width measurements on one sample, you’d be able to predict the measurements on a second sample from the same batch). I get a 0.3 correlation. What could I have possibly done wrong?

I soon find that although Black Oaks don’t usually produce missing rings, micro rings or false rings, it is still a possibility, for reasons I didn’t understand at that time. There is also the possibility of human error resulting from mounting the samples incorrectly, missing pieces of the sample after coring and so on. (Editor’s note: one of the biggest issues dating oaks is jumping from one side of a ray to another while moving down an increment core. Sometimes the rings that are aligned across this division are not!).

———

 

What I was doing up until this point was just writing down the years where I found narrow and wider rings as marker rings and trying to find a pattern with everything I wrote down. It was helpful, but I needed to learn more about cross dating to make a few problem samples correlate with the population.

First, I was told I could take a step back and get my nose off of the microscope. By holding up a problem sample to one with a good correlation, I could try and find where patterns aligned visually, and this was usually more helpful than just trying to find the patterns in a sea of numbers I had written down. Second, I was focusing too much on individual samples and not remembering that multiple cores are often taken from the same tree: before a sample can correlate well with an entire forest it is easier to make sure it correlates against the others from the same tree. Finally, I learned that some trees—the very young, the very old, and the trees that constantly get outcompeted for resources—just don’t conform: the rebels, the grumpy old men, the proud nerds. Very suppressed rings won’t correlate well with a series, and neither will very wide rings that signal a release from competition from neighboring giants.  Sometimes a 0.3 or a 0.4 correlation is the best you can get for a sample, and I had to learn how to know whether to accept that or keep trying further.

That first batch took me a week and a half to finally cross-date. You should’ve seen the look on my face when I saw my first correlation in the 0.5 range.

 

And that was just the black oak.

 

 N. Pederson

Two, twin black oak – velvet goodness! Photo: N. Pederson.

I decided to continue coming to the Tree Ring Lab over winter break, and at first it was incredibly peaceful. A few days of sanding and stabilizing some pines really put me in the Christmas spirit. And then I met Baldcypress, which made me more of a Grinch.

At first, baldcypress and I were really only going to be a one-time thing. I was only told to measure three or four batches from the 80s as a side project, but after I logged all the measurements the COFECHA results were cringe-worthy. I was told I had to try my hand at cross dating the cypress.

If I thought the black oak population had trouble samples, I reconsidered. While Quercus velutina hardly ever displays missing rings, false rings or micro rings, Taxodium distichum seems to want to flaunt them. My first batch had mostly been false rings, but I also learned what a micro ring actually looked like.

I remember staring at a set of what should have been ten rings for 20 minutes, but only seeing nine. I finally asked my advisor and then watched as Neil marked a band relatively darker than its surroundings a cell wide as a ring. If any ring could be called a marker ring, it was this one. Sometimes finding a micro ring where I knew, from the chronology, that a narrower ring should be, was actually a relief. 1966, a heavy drought year for most of the Northeastern US, quickly (and morbidly) became my favorite year.

I dealt with so many false rings that I felt like I was five and my fingers were all turning green (I’m glad no one ever showed me this; I always felt like a princess). Every time I thought a sample couldn’t have any more missing rings I found more. I started thinking everything was a micro ring.

The black oak took a week and a half. I’ve gotten through three batches of baldcypress, and I’m on my fourth: I started over winter break and it is currently spring break. Of course, I’ve been working on other things as well, including a poster presentation on my black oak samples for the Northeast Natural History Conference, but it feels as if the baldcypress just doesn’t want to leave me alone.

 

Yes, I do have a type. I like real rings, I like big rings and I like rings that conform. In the end, however, I’ve learned more from the “problem children” than the ones that worked out like I wanted them to. I might even admit that the baldcypress has been much more rewarding to work through.

Shhh, don’t tell the black oak.

________

 

Ana Camila Gonzalez is a first-year environmental science and creative writing student at Columbia University at the Tree Ring Laboratory of Lamont-Doherty Earth Observatory. She will be blogging on the process of tree-ring analysis, from field work to scientific presentations.

 

‘Are You Using This Idea for Your Thesis Research?’ [UPDATE]

The Broadleaf Papers - Thu, 02/28/2013 - 20:53

By Daniel D. Douglas

Are you using this idea for your thesis research?”

I heard this as I stood in front of a classroom full of old-growth forest ecology students. The question had come from Neil Pederson, who was sitting directly in front of me. He was asking this question because I had just spent the past 12 minutes discussing the intricacies of land snail biology and ecology that would make them great organisms to use for ecological modeling in regards to disturbance. Things such as their lack of mobility, susceptibility to desiccation and sudden change that would occur because of major disturbance make their preferences for habitat similar to the defining characteristics of old-growth. Neil looked at me with the excitement of a small child on Christmas morning because he knew that I could potentially be on to something.

So, you can imagine his dismay when I answered his question with “No, I hadn’t really given it any thought.” I know I winced (at least on the inside, if not physically) after I answered because I had suddenly realized that I could be passing up a golden opportunity. I remember walking back to my apartment that night, thinking about what had just happened. I thought about it another hour or so after I arrived home and then emailed Neil to discuss the potential that my presentation had for being used as a master’s research project. Long story short, we developed a research plan of attack with the help of David Brown, my co-advisor, to study how anthropogenic disturbance* can shape land snail communities.

Microsnails on the Honest Abe – can you find the 28 microsnails? Image: D. Douglas

Not many people study land snail ecology. I had the fortune of working under someone that did, Ron Caldwell, while I was an undergraduate at Lincoln Memorial University. I had become deeply interested in these ignored and overlooked organisms. So, as I entered graduate school in biological sciences at Eastern Kentucky University, I had a fairly strong background in “snailology”, aka malacology. I had been unsuccessful in finding a graduate program where I could continue to work with land snails and was wandering the halls of EKU uncertain about what I was going to do for a graduate research project.

What happened in Neil’s class that semester was really fate telling me this is what I should be doing. A year and a half later, I found myself sitting on my back porch sifting through leaf litter samples, picking out micro-snails, excitedly thinking “I’ve got something here.” It was clear that these organisms could be indicators of past human disturbance.

This research took me to some of the most memorable places that I’ve ever been. Since the availability of old-growth in Kentucky is sparse, my sampling sites were limited. The first place I sampled, Floracliff Nature Sanctuary, was just a few miles north in the Bluegrass Region of Kentucky and, oddly enough, a few miles outside of Lexington. It’s crazy to think that a place with trees hundreds of years old exists right outside a fairly large municipal area, but it does.

The EpiCenter, a relatively dense cluster of 300-400 year old chinkapin oak, in Floracliff Nature Sanctuary. Photo: B. James

Floracliff rests on the Kentucky River Palisades in a very rugged, deeply dissected network of gorges cut by streams over eons of geologic time. It also has some of the most spectacular examples of old-growth trees you’ll find in Kentucky, including the oldest known tree in Kentucky to date: a 400+ year old Chinqaupin Oak.

Though this wasn’t true old-growth, it gave me some of the best results I got for the entire study: there was a clear separation of the land snail communities between old and young forest sites. In fact, abundance, richness, and species diversity, were all greater in the older sites. This is also the site where I found the most new county records (i.e. never documented from that county). These results only whet my appetite for more data from different forests.

The next stop was EKU Natural Areas‘ Lilley Cornett Woods Appalachian Ecological Research Station, a small patch of prime mesophytic old-growth forest in Letcher County. It’s bizarre to think that forests like this exists in the Cumberland Plateau portion of Kentucky, due to the fact that our countries insatiable thirst for natural resources has left the region in one kind of an ecological ruin. I was deeply impressed by this forest as wandered around. The snails at LCW did not disappoint either. I saw the same patterns as in Floracliff: old-growth forest had greater abundance, richness, and diversity. The highest species richness for the entire study came from LCW as well, which is something that I did not expect. The evidence was beginning to stack up.

Big Everidge Hollow, old-growth forest goodness, in in Lilley Cornett Woods. Photo: D. Douglas

My final study site was Blanton Forest State Nature Preserve. This preserve is over 1200 hectares and contains the largest tract of old-growth forest in Kentucky. Dominated mostly by oak and hemlock, the forest is very rugged and it had more rhododendron than I care to remember.  Nevertheless, it is impressive. Comparing Blanton to a nearby young forest didn’t necessarily give me the same exact results, statistically speaking, but I still saw the same trend of higher abundance, richness, and diversity of microsnails in old-growth forest.

A phatt, old-growth white oak in Blanton Forest, Bob posing, Merril coring. Photo: N. Pederson

You may be asking, “What does this all mean” or, “Well, he found that there is better habitat for these organisms in undisturbed forests. That’s doesn’t really seem novel.” In reality, this is novel. Better, it is important.

First, I documented that a minimum of several decades, if not more than a century, is needed for land snail populations to recover to a point that resembles what their assemblages looked like before human disturbance. As an important part of forested ecosystems in terms of nutrient cycling, organic material decomposition, calcium sequestration, and food sources for many other animals, it is vital that we know things like this so that we can better manage our forests for everything that lives there, starting from the ground up. Second, all of you must know that everything in an ecosystem is interconnected and, once one thing is removed, it can have cascading effects throughout the ecosystem. Better management practices will help us maintain ecological integrity of forests. Third, my findings also indicate the need for locating and protecting remnants of old-growth forests. As I have shown, old forests, whether true old-growth or lightly logged by humans a century or more ago, are biodiversity hotspots and therefore deserve protection beyond their representation of how complex forests are at great ages. And finally, my findings also indicate that land snails have great potential for being used as indicators of old-growth. This is something that many scientists, especially citizen scientists, have been chasing after for decades.

For myself personally? This means that I have a lot more work to do. Despite the fact that there are people out there that study land snails, they remain poorly understood. I feel as if it is my job to bridge that gap in the knowledge. I also hope that what I have accomplished with this research will open the door for future studies on not just land snails, but other non-charismatic fauna. I also hope that my work enables people to look at more than just the trees in old-growth forests. The trees are wonderful, and we are lucky to still have them, but there is a lot going on underneath those trees that we don’t know much about.

 

* = the linked article is open access and free for downloading – download away!

[UPDATE]

Earthwise picked up this study for their radio series on our changing environment. Hear their piece on land snails and old-growth forests here.

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Daniel Douglas earned his master’s degree in biological science from Eastern Kentucky University in 2011 studying terrestrial snails, important, but less charismatic creatures.

You must be choking

Tree Stories - Tue, 06/26/2012 - 08:54

Every year, when the height of the dry season comes to northern Thailand, the air gets foul. The extent of the problem is dependent upon, among many factors, the weather and more specifically the temperature profile of the air.  When a temperature inversion sets in, warm air aloft “caps” the cooler air that has descended into the valleys and prevents circulation (the normal state of the atmosphere is a lapse rate of decreasing temperature with altitude). As a result of an inversion, air pollution from cars, buses, burning, cooking, construction, etc., gets trapped in the valleys and basins and develops into an increasingly toxic brew. This doesn’t occur to extreme levels every year, but I have experienced it several times in Chiang Mai over the past decade, and this past season was pretty bad (see Thailand: pollution puts Chiang Mai off the tourist trail).

Photos of Chiangmai air pollution this past season: All pictures were taken at midday, no clouds, just smog.

The levels of fine particulates became very high, and this causes major respiratory problems for many people, the very young and very old in particular. But clearly it doesn’t do anybody any good. Because I am prone to bronchial infections, when the air got bad this year I suffered for weeks with a severe hacking cough that may have led to my herniated disk injury. In a wonderful twist of irony, I traveled to Bangkok, Saigon and Taipei to get cleaner air to help me overcome my illness. It worked too, but when I returned to Chiang Mai before my return home I began to deteriorate once again. (See my blog post, That Thousandth Cut, for the backstory.)

The costs of this problem are very high, due to major health problems for a large and poor population, and flight delays in the region due to poor visibility. Since it is a very specific set of conditions that leads to these inversion events, it would be important to explore the effects of regional temperature projections and how this might effect the occurrence and duration of future events. More importantly, are there ways to mitigate the effects of these inversions?  Obviously, producing less fine particulates and reducing the primary pollution sources is paramount, but for that there needs to be the will at the highest of levels, and since the overall problem knows no borders, there isn’t the will. Much of the blame each year goes to the hill tribes who burn the surrounding mountainsides, but it seems that much of the source is more localized than that, and much of it is regional pollution that sits over the entire region. Whatever the source, however, something needs to be done. The problem is that when the rains come the awful air is cleared out, and with it any sense of urgency to act. It is then forgotten about until the next inversion comes a year later.  This short-term memory does not help.

This from a Chiang Mai based website on the problem:

Air Pollution: Key facts from the World Health Organization

  • Air pollution is a major environmental risk to health and is estimated to cause approximately 2 million premature deaths worldwide per year
  • Exposure to air pollutants is largely beyond the control of individuals and requires action by public authorities at the national, regional and even international levels.
  • The WHO Air quality guidelines represent the most widely agreed and up-to-date assessment of health effects of air pollution, recommending targets for air quality at which the health risks are significantly reduced.
  • By reducing particulate matter (PM10) pollution from 70 to 20 micrograms per cubic metre, we can cut air quality related deaths by around 15%.
  • By reducing air pollution levels, we can help countries reduce the global burden of disease from respiratory infections, heart disease, and lung cancer.
  • The WHO guidelines provide interim targets for countries that still have very high levels of air pollution to encourage the gradual cutting down of emissions. These interim targets are: a maximum of three days a year with up to 150 micrograms of PM10 per cubic metre (for short term peaks of air pollution), and 70 micrograms per cubic metre for long term exposures to PM10.

More than half of the burden from air pollution on human health is borne by people in developing countries. In many cities, the average annual levels of PM10 (the main source of which is the burning of fossil fuels) exceed 70 micrograms per cubic metre.  The guidelines say that, to prevent ill health, those levels should be lower than 20 micrograms per cubic metre.

Chiang Mai isn’t the only place that suffers from temperature inversions that create health hazards, and in fact it is a common problem for much of the basin and range country in the western USA. My colleagues at Utah State University suffer through an annual period of very poor air that gets trapped along the Wasatch Range every winter (see  NOAA, National Weather Service Forecast Office, Salt Lake City, UT). Therefore I plan to avoid going to Logan in the dead of winter. Therefore I plan to avoid going to Logan in the dead of winter.

As bad as the problem is in Chiang Mai, it is even worse in other parts of Thailand, and across much of Southeast Asia. The link between anthropogenic pollution — inclusive of greenhouse gases — and a plethora of health issues ought to be at least as compelling a reason for us to cut emissions than the far more difficult to understand link to AGW (Anthropogenic Global Warming.)

As I have alluded to earlier, if people can see how these issues can impact them in more immediately pressing ways they are more likely to care about action. I always thought the AGW debate was too esoteric and too complicated to explain to a general population that is bombarded with too much information on a daily basis. Whereas the “hey, this stuff can kill you” message is one that just might get through. As for me, I plan to avoid these areas when the air gets like this, so my forays into Southeast Asia will try to avoid the February-March season, and for good measure April too because it is so bloody hot! I am lucky enough to have the freedom to choose my residence times. For most of Chiang Mai’s population they don’t have that luxury, and they just have to endure the best they can. In the meantime, if you travel to northern Thailand, Laos or Myanmar in February, you might want to bring your gas mask.

 

That thousandth cut

Tree Stories - Tue, 05/22/2012 - 08:13

PALISADES, NEW YORK — My hands floated above my head, rotating in all directions, swaying weakly like reeds rustling in a gentle breeze. At least that was the image I held in my head, clouded as it was by the anesthesia. Between my hands I saw Orawan at the foot of the bed, staring at me with great relief in her face.

“Hey baby, how are you?” I asked almost a little too cheerfully, as I dropped my arms to the bed. ”Come here, give me a hug.” I was seriously groggy, and it was difficult to stay awake. I have memories of an alarm going off next to my head and a nurse urging me to breathe, happening more than once. I am not sure if that really happened or if it was imagined, but my memories from those few hours are hazy.

“Hey, go easy there.” Orawan chided as she took my hand. ”Try not to move too much.” I could sense the massive relief she was feeling, after waiting nearly 4 hours to see me after I left her standing in the hallway as they wheeled me into the theater.

The surgery was a success, or so I was informed. At least I could still move my arms, and I didn’t see a respirator anywhere in sight. I quickly checked for a colostomy bag and was relieved not to find one. I was still dopey enough that I couldn’t feel any pain yet (that would come in time), and the intense pain I had lived with for the past five weeks appeared to be gone, as the bits of ruptured disk had been removed from my spine, relieving the pressure on my C7 nerve head.

So, what happened? The week before I returned from Asia, on March 12, I awoke with a burning agony running down my left arm that would not desist. I didn’t know the extent of my injury until I had gotten home to New York and had an MRI, after a week of unrelenting pain in my left arm and under my scapula. It was a very uncomfortable flight across the Pacific back to New York, made tolerable only because of a class upgrade and lots and lots of drugs.

The MRI showed that I had clearly ruptured the disk between my C6 and C7 vertebrae, and surgery was pretty much the only option. Though I don’t remember it, I had told Dr. Quest that I loved him, emphasizing that it was not in any manner that should elicit his alarm, but love just the same. He took care of me as promised, and now that it was over I felt a massive sense of relief. Now, six weeks after surgery I am mostly recovered, with only minor pains and numbness as reminders of those terrible 5 weeks.

So what has this to do with climate change? Well it is the reason for my absence from this blog, since I couldn’t sit at my desk for more than 20 minutes at a time, and the reason for me barely accomplishing any work for more than a month. And now that I am recovering, I face a mountain of work the likes of which I have never seen, but never have I been so thankful for being able to work.

It had surely been a run of bad luck since my last entry, starting with the infection in my scalp from hitting that doorjamb in Chiang Mai, an infection that was not even cured when I developed a terrible bronchitis from the smoke and haze of Chiang Mai’s annual February foul air festival (a phenomenon that is related to climate change). After my return from Yunnan I went to Taipei for a week of lectures and meetings, and Taipei’s far cleaner air began healing my lungs, but I was still with a very deep cough that would often wrench me from sleep. I then went to Vietnam for a week for the opening of the International Center for Tropical Highlands Ecosystems Research, with even cleaner air in Dalat, and that just about finished off the bronchitis. But scarcely two days back in Chiang Mai, back in the horrible air, and I began to cough once again. It was then, on Monday the 12th of March that I awoke in such pain. The doctors believe that it may have been the pressure from coughing that served as the final straw in rupturing my disk, but in truth the injury was probably the result of a lifetime of accumulated injuries and strains, football, hockey, basketball, coring trees and carrying a backpack. It could have been any and all of those things.

So, I am back now, ready to catch up on a few entries I have wanted to write. I apologize to Lori for the long delay and I hope she can forgive me, and welcome me back. The way I see it things can only go up from here, now that Dr. Quest delivered that thousandth cut.

A thousand cuts

Tree Stories - Thu, 02/02/2012 - 20:15

CHIANG MAI, THAILAND — The expression “death by a thousand cuts” refers to the practice in imperial China of killing someone by slicing them repeatedly, never very deep, until they die from their multiple, tiny wounds. I thought of this on Friday night when I hit my head on a door jam, cutting my scalp on the rock-solid, wooden edge. This happens to me frequently over here, since I am about 188 cm tall and the bathroom doors are always about 185 cm maximum. Just low enough that if I walk through upright I get a nice laceration on the top of my increasingly sparsely covered pate. I am pretty used to this by now, so aside from a momentary barrage of cursing, I didn’t think much more about it for the rest of the evening. However, the next morning, I awoke with a pain behind both ears and a bizarrely misshapen, triple-horned crest on the top of my head that was hot to the touch. Infection had occurred in about 5 hours. I went to Suan Dok Hospital the next day and the doctor said, “Yep, you have an abscess on your scalp, and the pain behind your ears is the swollen lymph nodes that drain the scalp.” He prescribed antibiotics and some wound dressings and told me to come see him next Saturday. After 3 days of medicine the infection is gone, and the swelling is down.

I have always heard how one needs to keep one’s wounds thoroughly cleansed in the tropics to stave off infection and sepsis, but I spend so much time here that I have gotten careless. I am reckless and clumsy, and I have had multiple wounds from a variety of things, and none has gotten infected to this stage. And it happened so rapidly that I was taken by surprise.  Death by a thousand cuts.

I leave for Xishuangbanna in southern China on Sunday. I am going there to lecture at the Xishuangbanna Tropical Botanic Garden hosted by my colleague Dr. Fan Zexin. Fan was one of the participants at the PAGES Asia2k workshop we just held in Chiang Mai, having been a contributor of tree ring data from the upper reaches of the Mekong River in Yunnan province. We are planning a collaborative project on studying the rare and endangered conifer Taiwania cryptomerioides that can still be found in some isolated stands. These trees are quite huge and can attain great age, but have been seldom studied for tree ring analyses and have the potential for great value in the upper Mekong. They are also being cut at an alarming rate everywhere they are found, so we are on somewhat of a salvage mission. If we are to get into the areas of Yunnan where the trees are found, it might have to be in late August after the winter cold and the worst of the monsoon rains.

One thing about developing tree ring reconstructions of streamflow, it has been shown that temperature from the upper headwaters regions can be as important a factor as rainfall for predicting baseline streamflow because of the importance of meltwater in keeping up base flow (i.e., flow in the dry season in the case of the Mekong, rather than the sizeable contribution of the annual monsoon rainfall that contributes to peak flow). This work is part of the overall goals of my Greater Mekong Basin project, and will give us the very important record of how the Mekong streamflow may have varied back in key periods of the past millennia. I will send an update from Xishuangbanna when I am there, and try to include some good pictures of the place. I have never been there so I don’t know what to expect.

It has been pointed out to me more than once that I have a tendency to talk about food a lot in my blogs. With this in mind, I will be sure to report on the great meals I am bound to have in Yunnan, and send some pictures as well.

 

My dinner with Usama

Tree Stories - Sun, 01/29/2012 - 14:03
The PAGES Asia2k Workshop participants

The PAGES Asia2k Workshop participants at EFEO, Chiang Mai.

CHIANG MAI, THAILAND — There was one table available, just being vacated, and Orawan and I hurried to grab it. The place was filled with foreign visitors — Australians, Israelis, Americans and Dutch — and they were talking loudly, drinking beer and wine, clinking forks and spoons noisily on plates filled with hummus, tabouleh and falafel. We fought our way through the tight crowd and made it to the table before the previous diners plates had been cleared. Andrew and Piyawit were both running late. This was it, the very end of the PAGES Asia2k workshop for us, and Andrew was the last participant to leave Chiang Mai. It was an exhausting week for us, and now it was over, the dust beginning to settle on a meeting whose objectives were not entirely met. In the midst of the noise and confusion a hand touched my shoulder and I turned to see the owner of Jerusalem Falafel, Zahavit, with a perplexed look on her face.

“What are you trying to do to me?” she said, looking serious. I realized I was smiling at her, in anticipation of our usually warm greeting, so I quickly sobered my expression to match hers.

“Im sorry?” I said. I had no idea what she was talking about. I watched as Orawan secured our table and then I turned to face Zahavit and give her my full attention.

“Why did you bring an Afghani into my restaurant the other night?” she was clearly distraught. “Didn’t you read the news this week? In Bangkok they arrested Al Qaeda members sneaking explosives into Thailand and some of them got away. I nearly had a heart attack when I saw him, but then I realized he was with you.”

“Oh, you mean Usama!” I blurted out, and quickly realized that saying his name likely didn’t help matters. “He’s not Afghan, he’s Pakistani.”I offered, perhaps helping even less. “He’s a great kid, a PhD student from Karachi studying with a colleague of mine. Really, he is a very sweet young man, and very bright.”

“I know now he is okay.” She said, more relaxed. “But at the time I nearly fainted. You should have told me you were bringing him when you made the reservation!” She scolded, and slapped my shoulder lightly to emphasize her concern.

The truth is, it never occurred to me that Zahavit, an Israeli expat living in Thailand, married to a local Chiang Mai man, and running this hugely popular restaurant since 1991, might be alarmed at my bringing Usama to her restaurant. I hadn’t seen any news all week, as I had been too busy with the workshop, but I also hadn’t planned to invite people to dinner here until the end of the day, choosing to come here primarily because we had three vegetarians in tow, and the food has never disappointed us. Zahavit and her husband, Chiang, are very friendly and most gracious, their food is excellent and it is one of my very favorite restaurants in Chiang Mai. Funny enough, when I asked Usama to join us, it occurred to me to ask if it bothered him that the place was Israeli. He looked at me, puzzled, and replied, “If the food is good and it is vegetarian, why would I mind?” Fair enough, I thought, and that was the end of it. But I can only imagine the alarm felt by Zahavit, at the sight of a young Pakistani man, decked out in full local garb and sporting the thickest black beard I have ever seen, walk into her restaurant and take a seat. It has apparently never happened before.

**********************

Usama and I

Usama and I take a coffee break.

“Usama Zafer Muhammed” I read his name out loud from the workshop participant list. He had joined me on the long teakwood bench outside of the conference room at the Ecole Francaise D’Extreme Orient, the beautiful location along the banks of the River Ping that was hosting our workshop (EFEO). It was during a coffee break, and Usama and I had been discussing the software I had just demonstrated that allows us to create point-by-point regression (PPR) reconstructions of climate from tree rings (while the folks who developed it were busy in another room attempting to reconstruct temperature over Asia — more on that in a minute), or other proxy sources that can be calibrated with climate data.

“Well, your name will almost surely cause you to be delayed at U.S. customs, but other than that I don’t believe you would have any problems”. Usama had asked me, with real concern on his face, if he would be in danger if he came to visit the U.S. The question really threw me, because as Americans we don’t think of our country as being unsafe to others, but it goes without saying that we all think of Pakistan as being a certain death for us to visit. Usama is a devout Muslim, and several times during the workshop he would go into a separate room to pray before returning to our group. He had told me earlier, when talking about sampling in the remote mountains of his country, that even he wasn’t safe in some areas because his religious and political views were far too moderate. However, he added, that if I were to travel with him to some of the areas where he is known, that I too would be safe, and in these other areas, we would both be in danger. I thought about it and realized that there are places in America that I don’t feel safe either, and places where I am pretty certain he might be hassled for being a Muslim. We surely have our share of violence and bigotry in America, though it is a very small minority that would engage in such behavior. Usama was making the point that it was the same in Pakistan, though the constant war and instability in that region, coupled with poverty and lack of real education for many, certainly exacerbate things.

In 2007 I had cancelled my trip to visit Usamas research institute in Karachi due to an attack at the airport in the hour before my plane was to leave Bangkok. Just as we were queuing at the gate, an announcement was made that the flight had been cancelled and they were putting us up at the Novotel for the night. In the ensuing confusion and while we all milled around at the gate the story came out that it was an act of terrorism in Karachi that was responsible for our cancellation. Early reports told of more than 40 people killed, and that the Karachi airport was unsafe. They would put us up for the night and see how things looked in the morning. Among the people on this flight were several Pakistanis, a few Australians, and one American marine on the security team at the Consulate in Karachi, and I had time to talk with many of them. The Pakistanis were all very sad to hear the news of the flight cancellation, and seemed distraught that I was now leaning toward not going. They seemed intent on convincing me that it was not as unsafe as I was hearing and that I should really go. I was headed there at the request of my colleague, Dr. Moinuddin Ahmed, to help him conduct a dendrochronology symposium and training session that was going to introduce tree ring analyses into their University system for the first time. It seemed quite exciting at the time I agreed, but now it seemed a little too exciting. I called Orawan from the airport and as soon as I told her what was happening she said, “I really don’t think you should go. Is it really worth the risk? I would feel better if you came back to Chiang Mai.” As far as I was concerned that was the last word, but I still was tempted to go until the marine took me aside, out of earshot of the others.

“How important is it for you to be in Karachi for this meeting?” he asked.

“Well, I promised my colleague that I would be there, I really ought to try.”

“Listen, you should know that the U.S. considers Karachi to be the most dangerous city for Americans in Asia, less safe even than Kabul and Baghdad. Dude, there is no green zone there and the Consulate is far from the airport. There’s nothing we can do for you if you get into trouble, so unless you absolutely have to go, I wouldn’t.” That was all he said, and that was all I needed to hear. The next morning they had resumed the flight to Karachi as the situation had stabilized, but I was on the first plane to Chiang Mai, to the great relief of my wife.

**********************

Paul Krusic, from Sweden, speaking with Usama

Paul Krusic, from Sweden, speaking with Usama at the workshop.

Usama presented his tree ring records from the high mountains of Pakistan, collected and processed over the past several years with Dr. Ahmed and other colleagues (see 500 years of Indus River flow modeling with tree rings), and he was here in Chiang Mai because he was among several other Asian researchers who were contributing their data to the overall PAGES Asia2k initiative that is charged with developing temperature reconstructions from Asia that ideally will cover the past 2 thousand years (hence, Asia2k). There are 2k initiatives for North and South America, Europe, Africa, Australia and even the Oceans. In all cases there are challenges of many kinds in producing the desired product (i.e., annual temperature — which will be used for the next AR5 model runs for the next IPCC assessment), but for Africa and Asia there are certainly greater obstacles than for other regions. Many of these difficulties are related to the fact that multiple, and often unstable, political entities comprise these continents, while many others are related to the culture of science in many of these countries where data sharing is simply not the norm. But one of the biggest obstacles is really that the proxy data are mostly precipitation sensitive more than they are temperature sensitive. As I have said previously, I believe that temperature (i.e., AGW related temperature) is only important because of its effects on the distribution of water on the planet, and it seems far more important to me that we understand the variability in precipitation around the globe, and to figure out how this might change in the future.

dr edward cook

Dr. Edward Cook addressing the workshop.

The director of my laboratory, Dr. Edward Cook, and I are both on the Asia2k committee, and at a meeting in Nagoya 2 years ago we worried how far behind our group was compared to others from the Americas, Australia and Europe, with regard to getting the necessary data from the research community. It was then that we hatched the idea (mainly it was Dr. Olga Solominas idea, and a great idea at that) to entice folks to submit their data in exchange for training in analyses that might speed up the process for some non-native English speakers to get their results published in top-tier international journals. The idea was to hold the meeting somewhere in Asia that was convenient for all participants, and not too expensive since our budget was quite limited. Since I was residing in Chiang Mai for several months each year, I offered to be a one-man local organizing committee (really two, to be fair, because of how much assistance I got from Orawan), and arranged to hold the meeting at the EFEO Chiang Mai center, just outside of Chiang Mais inner city wall and along the banks of the River Ping.

The meeting was three days long, and our primary objective was to use the newly contributed data (mostly tree rings, but some historical documentation-derived indices from Japan and China, some ice core data, and some lake sediment data as well) to produce a new temperature reconstruction from the Asian continent. Without going into too much detail here (stay tuned for that), we were not able to get a fully calibrated and verified reconstruction in the short time we had, and with the data set we ended up with, but we are a work in progress. There are a lot of difficulties associated with doing these kinds of reconstructions, not least of which is data quality control. At the end of the day, we are going to have about a 500-year temperature reconstruction for Asia, a far cry from the 2,000-year target, but better than a kebab skewer in the eye.

**********************

Usama grinned broadly and extended his hand to me and I shook it. He was genuinely grateful for the hospitality he was shown while in Chiang Mai, and his presence was one of the pleasant surprises for me. He and our Nepali participant, Narayan Gaire, were leaving the guesthouse together in a red sawng taew (the two-benched pickup trucks that are used in Chiang Mai as public transportation) to go to the airport. They had become good friends over the past few years having met at several regional workshops. These are fledgling dendrochronology programs in both of these countries, and it is remarkable to see the enthusiasm with which these two young men embrace learning this field of study. It will be because of the efforts of people like this that we are to have any chance of improving living standards across the globe, through education and engagement in the work the rest of us are doing — as equals and not perpetually as aid projects.

I was most impressed with these two fine young men, and I wished them both well on their journeys home. It saddens me terribly that our world is so unstable, and that we have the kinds of hatred that leads us to war with peoples in far flung lands, who have so little in material wealth, and yet strive to have the kind of enriched life that we take for granted. It is for that reason that I will think fondly of our little workshop, flawed as it was, and on my dinner with Usama, as a reminder of what is truly important.

And then the rains came …

Tree Stories - Fri, 01/20/2012 - 09:52

malee-nature-lovers-bungalowCHIANG MAI, THAILAND —  ”Rain never come in January.”  Malee had overheard me predicting heavy rain for the night, as the black clouds swirled around the steep limestone cliffs at the base of Doi Luang. The clouds tore off in little wisps of vapor, black and menacing, and rose upward, obscuring the jagged, orange-stained, overhanging wall that was visible from Malee’s Nature Lover’s Bungalows in Chiang Dao. She brought 4 cups of home-roasted coffee, a basket of home made spring rolls, and two plates of coarsely cut French fries, stacked high, to the table and set these down in front of us.

“Not big rain, like you say now” she continued, “sometime small rain only.”  She pronounced the word “small” as suh-mawn. As spelled in Thai based on its Sanskrit origins, words that end with the equivalent of the letter “L” are pronounced as we pronounce “N”, which is one of the more endearing things about Thai speaking English, to my ear.

Malee, always cheerful, has been a friend of ours for more than a decade. Orawan and I stumbled upon this amazing place in 1998 while looking for field sites. I was in search of the two Thai pine species that were reported to grow in the area, and we drove up the narrow road that dead-ended at an amazing cliff side Buddhist temple about 1 km past her rustic sign. At that time hers was the only guesthouse in this entire area, surrounded by empty fields and jungle, and local villagers foraged the nearby forests for bamboo, edible plants, and anything else of use. We stayed there one night and it seemed within hours we were friends, and we stayed with her numerous times until about 5 years ago when we stopped working in the region. Malee came to our wedding in Chiang Mai in October 2001, one month after the terrible 9/11 attacks. Coming back here now was like visiting family again after a long absence. In the years that have passed much has changed, and now there are guesthouses everywhere on this road, in the true Thai fashion of mimicking what has proven successful. But still, in spite of the oversupply of copycat businesses, Malee’s is an oasis of peace and quiet, and her business is very successful.

buddhist temple

Cliffside buddhist wat near Malee's guest house.

It is true that it is highly unusual for heavy rain to fall between December and April in northern Thailand, the months that comprise the driest part of the annual dry season. In the two decades that Malee has run her business, neither she nor any of her staff can remember heavy January rains like that which we were about to get. In most years it remains virtually rain free from late November until late April, when the heat reaches unbearable heights and the humidity boils up from the Gulf of Thailand. That is when the rains come, in May and June, not now.

The rhythm of the Asian Monsoon, as reliable as your own heartbeat, tracks the movement of the Intertropical Convergence Zone (ITCZ), which follows the migration of the sun’s most vertical ray from the Tropic of Capricorn in the Austral summer, to the Tropic of Cancer in Boreal summer — 23.5 degrees latitude in both hemispheres, respectively.  This is the stuff of Physical Geography 101, and I can still hear the booming voice of the late Dr. Dow, my undergraduate advisor and mentor:

“The ITCZ moves north and south with the seasons, and this means… What?… Brendan! What does it mean when the ITCZ moves north to 23.5 degrees latitude?” The fear that accompanied students in Dr. Dow’s classes was ubiquitous across the room, particularly for those inclined not to pay attention. I thought of Dr. Dow now, and how I am glad that I was one of the students who actually did pay attention.

“I don’t know, Malee, it sure looks like heavy rain to me.” I said.

“Not possible” she replied, “it not rain in January”.

Hours later, as the rain pounded the metal roof of our bungalow with hellish force for two straight hours I thought about how one of the lessons of the prior week’s workshop in Chiang Mai applied to the anomalous weather we were experiencing today. Dr. Andrew Bell, a post-doctoral fellow working with me for the past year, presented work we have been doing for our Greater Mekong Basin project that uses our long tree ring records to inform climate predictions with extremely simple models that even small-scale farmers might be able to use. There are predictions made by local religious leaders from nearly all countries in Southeast Asia, for example in Thai from the Nung Seu Bee Mai Mueng “Book of the Northern New Year” which gives some kind of guidance to farmers. What Andrew has found is that these predictions have some degree of predictive skill simply because climate has a tendency to show persistence from one year to the next, and to statisticians this can be modeled as autocorrelation.

brendan

Not only was it raining hard, it was cold too.

This feature of climate data is obvious when thinking about the seasonal shifts that we know well, for example, New York’s winter is cold, so there is a degree of correlation between January of one year and January of the next (i.e., both will be cold). The same is true for the dry season of Thailand — January will be dry in each year, hence the autocorrelation. The anomalous years, however, also tend towards persistence, such that if it is wetter or drier than usual (or colder or warmer, if you will) in a given season, the tendency to remain the same for the next year is slightly better odds than flipping a coin. So, if we assume persistence in the climate we can do a reasonably good job of predicting climate for the following season only. However, if we want to make informed 5-year or longer predictions, so that farmers might make more bold decisions about how and what to plant, and increase their profit margins, we need a better predictive tool than just guessing at persistence.

Andrew demonstrates that by using centuries or more of background data (e.g., long tree ring reconstructions of drought indices) one can do a pretty good job, far better than merely assuming persistence, at deciding what the next 5 years are going to be like, and the longer the record leading up to a given period, the better we do at predicting those next 5 years. The offshoot is more than just deciding what to plant, however. The real prize is in being able to use this information to give some form of blanket insurance to small-scale farmers, known as index insurance, which allows for coverage in case of drought or some other climate index value that is determined to be important. Interestingly, it is not the failure of the crops that is being insured, but the failure in the climate. Whether or not the climate adversely affects the crops is not relevant, as payout is made solely on the basis of climate. And by having lots and lots of small farmers buy into such a scheme, the greedy insurance companies can still make their profits and keep the costs low. For the GMB project, we are tasked with trying to find out how climate and its impacts can lead to conflict, what the parameters are for the conflict, and what factors are necessary to mitigate conflicts when they occur. We always believe that the past can help inform us of our present and our future, so using proxy records in these ways is done with this in mind.

doi luang after the rain

After the rain

The rain had ceased long enough for Orawan and me to walk out to meet our friends Paul and Anna, and their two children, Jonas and Amarita, who had gone out for a late lunch, and we joined them at the Chiang Dao Cave, about 2 km downhill from Malee’s. They sat out the rain in a small roadside restaurant, ordering food by pointing at things that looked appealing and hoping for good results. Paul and Anna are both seasoned travelers, and are no strangers to off-the-beaten-path locations, so they were enjoying their time in the village. We met them and strolled around the neighborhood, finding giant spiders and dead snakes, and an assortment of other horrible things the kids were fascinated with.

By the time we walked back to Malee’s it was near time for dinner, and the rain was beginning again. We had scarcely finished eating around 8:00 p.m. and walked back to our bungalow when the rain began in earnest. Broad sheets of water pounded the roof with a deafening roar until the morning light began to infiltrate our room. It was clear, that for today at least, the rains had come.

When it rains it pours. That phrase entered my mind, as I lay awake, eyes wide open, my wife breathing deeply beside me in the depths of slumber. Malee’s has always been one of the darkest places I have ever been at night, but on this night it was blacker than usual and I had a difficult time making out any features in the room through the impenetrable darkness. I had been having an inordinate number of interpersonal breakdowns with people lately, colleagues in particular, and I considered the notion that often things, negative things, come in groups or clusters, like rain falling. When it rains it pours.  I agonized over the role I may have played, either indirectly or perhaps through callous indifference, in developing these rifts with other people, and I wonder sometimes about karma, and about biorhythms or other phenomenon that can lead to such things. Or maybe it is just the way of the world that sometimes we enter anomalous periods and lots of shit goes wrong. My Vietnamese friends tell me that my age, 53, is a very unlucky year, as is 49.  I don’t remember much about 49, but in truth my 53rd year has been an outstanding year on many fronts. However, whatever is wrong with the cosmos lately that has me offside of so many people could be just a passing anomaly that will wash away, run off or be absorbed like the heavy January rains on the limestone flanks of Doi Luang.

The message of the day resonated with me.

Surviving doomsday, bat poop and deniers

Tree Stories - Tue, 01/03/2012 - 13:07

PHNOM PENH, CAMBODIA — 2012 arrived in Phnom Penh with a splashy display of fireworks, and raging bands of celebrating Khmer youth who beckoned me to join their celebrations as I walked past them on my way back to my hotel. But conspicuously absent was the promised 2012 doom-and-end-of-the-world business that I was so looking forward to (although, it is still 2011 in the other half of the world, so I suppose there is time yet for Armageddon).

I had arrived in Phnom Penh just in time to join three fascinating women for dinner, Nancy Beavan and Sian Halcrow who I met in early 2010 when we worked together on a log coffin/jar burial site in southern Cambodia, and Kelly Fitzpatrick, the personal assistant to the Head of Administration for the Khmer Rouge Tribunal, whom I was meeting for the first time. Kelly was the PA to Andrew Cayly, the Co-Prosecutor for the Tribunal, before she recently switched jobs. Unfortunately I didn’t get to talk to her too much about her work, because it sounded truly fascinating. Nancy is an ex-Lamonter and a radiocarbon specialist who has been working and living in New Zealand for years, and is one of the more colorful people I have met in academia. By way of example, she worked for 8 days on the above-mentioned field trip to Phnom Pel with a rather obviously broken arm, and kept insisting “it really isn’t that bad, I don’t think it’s broken” while refusing to leave the field site early for treatment. However the moment I arrived at the field site I could see that her arm was broken, even after having been transported by taxi, rivercraft and motorcycle in the stifling, searing heat of the Cambodian lowlands, my brains still scrambled from the heat … the first words from my mouth were “How did you break your arm?”

Always cheerful and talkative, Nancy is a rare person with a remarkable path to academia and science. Among the more interesting aspects of her juvenile delinquency was running with motorcycle gangs, being a horse thief (okay, that sounds worse than it was!) and being an all around wild child before being brought into Columbia University under some sort of special program for at-risk youth, and that is how she ended up at Lamont-Doherty and met legendary Earth scientists like Wally Broecker and Lynn Sykes, among many others. She moved to New Zealand with her husband John Beavan, whom she met at Lamont, where she worked for years as a radiocarbon specialist before pursuing, rather later in life like me, her Ph.D. She is not one to shy away from controversy and a good scientific battle, a trait she attributes to her time with Wally and the other heavy hitters of the science world at Lamont. She is in the middle of a rather interesting row regarding the timing of the arrival of the first rats in New Zealand, and in true American fashion, exhibited little cultural sensitivity to the NZ scientific community’s consensus on such matters. I listened, riveted, to this story around a campfire in Cambodia, with rogue elephants crashing through the forest, and it was one of the highlights of this amazing trip which is captured by this wonderful radio piece by the freelance journalist and all-around nice guy, Brian Calvert, who joined us in Phnom Pel. The link is here. While you are at it, you might visit Brian’s website for some samples of his excellent writing, and truly ballsy journalism.

Sian Halcrow is a professor at Otago University in the lovely South Island city of Dunedin, New Zealand, and she spends much of her time each year working on archaeological sites in Thailand’s Isaan Province on the Cambodian border. Sian and Nancy have worked together for years, and have developed a really fun rapport that is great to be around. It was good fortune, therefore, that I was able to join them last night, since today Nancy is driving to the southern Cardamoms with a huge payload of food and supplies to be helicoptered into a new and very exciting jar site that they are just beginning to work on, and Sian seemed like some serious jetlag was coming on (she had just arrived from New Zealand).

Nancy just recently wrote a manuscript on the work so far on these coffins, based in large part on the series of Accelerator Mass Spectrometer (AMS) dates we managed from the little bits of wood I cut off the ends of each of the coffins. (When it makes it through the review process I will include more information, because it is quite fascinating). I tried to core the coffins with a micro-corer by crawling on my belly on narrow ledges, in the oppressively humid heat, where they were left by unknown people centuries ago (and I have the bat shit-impregnated clothing to prove it!) so I had to abandon that idea as it made the locals very nervous to think I might split the coffins in half. There is still much belief in ghosts and spirits in this part of the world, and they were not too happy with the possibility of pissing off the evil spirits! This continuing work in the Cardamoms is truly interesting, so I will try to keep things updated as the exciting bits begin to emerge. (For more on my attempt to core the coffins read, Race to the spice highlands: An expedition to Cardamom Mountains.)

After a long time without doing so, I finally logged onto my blog page the other day, and I saw there was a recent message from Paul B. who wrote in response to last year’s entry on Debating Global Warming: Lines in the sand.

“Believer?” “Denier?” These words are the realm of religion, not science.

Regarding AGW (anthropogenic global warming), I defy anyone to define the FALSIFIABLE HYPOTHESIS.

No one will. Because there isn’t one.

AGW is Lysenkoism at its finest: science-by-consensus … mob science.

The Consensus said Galileo was wrong. But The Consensus is a logical fallacy just waiting to happen.

Earth to REAL scientists … wake up!

First I want to thank Paul B. for getting me to look up Lysenkoism on Wikipedia, which describes, among other things:

Lysenkoism, or Lysenko-Michurinism, also denotes the biological inheritance principle which Trofim Lysenko subscribed to and which derive from theories of the heritability of acquired characteristics, a body of biological inheritance theory which departs from Mendelism and that Lysenko named “Michurinism”.

The word is derived from the centralized political control exercised over the fields of genetics and agriculture by the director of the Soviet Lenin All-Union Academy of Agricultural Sciences, Trofim Denisovich Lysenko and his followers, which began in the late 1920s and formally ended in 1964.

Lysenkoism is used colloquially to describe the manipulation or distortion of the scientific process as a way to reach a predetermined conclusion as dictated by an ideological bias, often related to social or political objectives.

Well, I admit I hadn’t heard of Lysenkoism, and I am thankful for the chance to add that to my increasingly overflowing brain storage area.  As I interpret it, Paul B. is clearly implying that the side that is manipulating and distorting the facts is the one that claims there is a human component to warming temperatures (i.e., AGW — and incidentally, nice touch equating climate scientists and Leninism in the same sentence — well played, sir), and this manipulation was conducted for purely political reasons. To this end, presumably, there is no political reasoning on the other side of the debate — the side that states humans can’t possibly be influencing the climate, which is the view pushed by the energy sector and other industry-friendly groups — you know the groups with political reasons for pushing a no-AGW agenda. Hmmm … now, if only I could find a way to link them to Nazis …

To be totally fair, there is politics on both sides of any debate, and I thought I was clear that I believe that very thing in my Debating entry. I am not sure that Paul B. read carefully what I wrote, but be that as it may, I would like to think that, as scientists, we avoid “picking sides” of a debate and instead concentrate on doing the best analyses of data that we can do in order to prove or disprove hypotheses … when possible. I know that is not always true, of course, but in my experience I have met very few individuals, inclusive of the main Climategate players, who didn’t seem completely above board when it came to their science. We may have an informed opinion on the matter, but we ought to strive for letting the data speak for itself, and being able to admit when we were wrong. (Is it so wrong to gloat a little when we are proven right?)  When someone questions an interpretation we make, it is an opportunity to look for corroboration or refutation of that interpretation. That is our job, in fact.

This was the idea behind the BEST project (please go to Berkeley Earth Surface Temperature for full details on this fascinating attempt to take the politics out of the AGW debate). This really was an independently funded initiative, and was in large part driven by Paul B.’s “deniers” including the much-vilified Koch Brothers and other industry friendly groups, who I can only imagine were hoping for an entirely different outcome from the one that emerged. The lead PI (principal investigator) was Dr. Richard Muller, himself quite skeptical of the AGW alarmists (another incendiary term — I plan to use a lot of those this year). In short the BEST study does not prove or disprove that AGW is real, but it does do something equally as important. It really does show that, some of the more embarrassing emails from some of our scientific community aside, that the climate scientists were not falsifying data as Paul B. and others would like us to believe, and there were more things correct than incorrect in the way data have been analyzed to this point (climate data in particular). In short, there is no sinister motivation in play by climate scientists to keep our highly lucrative jobs going.

The real story here then, with regard to BEST, is that there almost was no story. I am willing to bet that if a poll were taken in America that it would be a very small minority that has even heard of it, while that same poll with regard to Climategate (there I go, incendiary yet again!) would show a very high awareness, in direct proportion to the amount of media coverage they respectively received. Where did this story go?

I don’t mean to be disrespectful of Paul B. and others who have a viewpoint that I may or may not agree with. I for one actually do leave myself open to being convinced one way or the other on any matter. It is the tone of Paul B.’s message that I find objectionable. It isn’t debate, but just name-calling (though, admittedly creative name-calling) and does little to advance real answers to anything. It solidifies a base, nothing more. I wonder what Paul B. and others have to say about the BEST study? I welcome more comments on the matter, I really do.

And by the way, to all the Nazis, Commies, and other unsavory types out there, Happy New Year, and be safe and prosperous in 2012. I don’t believe our world will end this year, and that bias will color everything I do or say for the remainder of 2012. Lysenkoism, it seems, is alive and well.

The road to hell

Tree Stories - Sat, 12/31/2011 - 10:09

The Writers Club and Wine Bar on Ratchadomnoen Road, Chiang Mai

CHIANG MAI, THAILAND — The Writer’s Club is a small bar and restaurant on Ratchadomneon Road in central Chiang Mai, and I sat facing the street, sipping contemplatively on a glass of the house red wine, inexpensive but surprisingly good. Orawan sat across the table from me, and we were discussing my inability to launch my first blog entry of the new season abroad, after my last entry about 9 months ago. I had been going on about this in my mind for the past few days, agonizing on what I was going to write, and how many other more important things I had to write first — a pre-proposal that is due in a week, 2 paper reviews and a review for an NSF proposal still not finished. It all bothered me, this pile of impending work, and yet I was having a difficult time getting stuck into any of it. Still, it nagged at me most that I hadn’t gotten around to writing a simple entry for this blog, just to jump start things for the new season. I realize it has to take a back seat to my real work, but I had promised Lori that I would have something written on the long flight across the Pacific. And here I was, empty-handed.

“I intended to have at least 2 entries by now.” I said, more to myself than to my glassy-eyed wife, who was becoming bored with my whining about my unfulfilled intentions. “Seriously, I have a plan.  I will get this done.” I didn’t sound all that convincing.

“You know …” she began slowly, looking at the red wine that she twirled in her glass distractedly “that the road to hell is quite literally paved with such good intentions.”  This last part dripped with no small amount of sarcasm. “No, really …” she continued, “I have it on good authority — the late Mrs. Buckley (God rest her soul) who told me as much.”  My mother was fond of these kinds of expressions, and my own wife’s love of wordplay drew them to each other in the short time they had together before my mother’s passing. Orawan has been writing every day since we got here last week, short stories mostly for various Thai publications. Her diligence has impressed me, and quite frankly I thought she was being a bit smug about it now, in the face of my own losing battle with internal demons.

“Is that so?” I inquired with mock indignity. “Well I have it on equally good authority, the late Uthai Tong-Jeeeeeet (I said this last part exaggerating the way Orawan’s father would pronounce their family name, Tongjit, by drawing out the last syllable because in Thai the name ends with two “t” consonants — incorrectly so on his part, I should add) that Gum kee dee qua gum dot!”  I sat back, satisfied that I had won this round of witty repartee.

“That doesn’t even make any sense.” She threw back at me. “I would rather have a handful of feces than a handful of flatulence? How is that relevant to this discussion?”

“I don’t know.” I mumbled, looking around now for some new distraction. “Hey look, Michael Vickery is here.”  I got up and walked toward a shiny-pated, white mustached man sitting at the bar, drinking a glass of white wine.

writers-club

Sitting in the Writers Club, with proprietor the lovely Mrs. Thong, in the background.

Michael Vickery, the famous and colorful Southeast Asian and Khmer historian whose 1977 Ph.D. dissertation at Yale University was titled “Cambodia After Angkor, the Chronicular Evidence for the Fourteenth to Sixteenth Centuries”, is a long-time resident of Southeast Asia, most recently residing in Chiang Mai. He is a prolific writer of history, and still regularly visits his beloved Cambodia for months at a time, and in fact I met him a couple of years back at the EFEO in Siem Reap, where he and I were both keynote speakers at a workshop on the University of Sydney’s Greater Angkor Project. The beautiful thing about Michael, I discovered quickly enough, is that whatever is in his head usually comes out from his mouth, unfiltered. He can say the most wonderfully inappropriate things in mixed company, and usually of a prurient nature.  Here is my chance, I thought, to get something juicy and politically incorrect that I can use in my blog.

“Michael Vickery, how are you doing?” I asked, extending my hand.

“I can’t see your face. Who is that?” came the reply, his hand shading his eyes as he squinted in my direction. It was already evening and the bar was dimly lit. I noticed that his large, Mr. Magoo-like glasses were sitting beside him on the bar, so of course he couldn’t see a thing. He wore his usual local garb, the loose-fitting cotton seua puen mueng that he sported exclusively. Michael is a regular visitor to the Writer’s Club and other Chiang Mai haunts, and he usually has some rather hysterically candid things to say about the “wannabe writers” who inhabit the place.  As acerbic as he can sometimes seem, I have grown quite fond of the man, from the few meetings we have had, and the stories I hear from others who have met him. And he is really a brilliant mind with regard to the history of the region.

“Brendan Buckley,” I said.”It’s me, Brendan Buckley.”

“Oh yes, tree rings. How are your tree rings, Brendan Buckley?”

“They’re fine, Michael. My tree rings are all fine.”

We chatted for a few minutes, but he had to run off so I ended up with nothing juicy to quote from him. I returned to our table after but a few moments, slightly deflated, as our food came — a delicious Thai ginger soup and a few other dishes that we had ordered.

“Micheal is a pretty interesting guy,” I said to Orawan who was savoring the first spoonful of Tom Kaa Gai. “Maybe I can work him into my blog entry?  I don’t know, like something about Angkor and climate change, something like that. What do you think?”

“I thought you planned to write about that BEST study from Berkeley that you were going on about the other day.” Orawan responded. “You kept saying how it was an independent vindication of the integrity of the climate scientists but hardly got a word of press, while the so-called Climategate business got covered to death and blah, blah blah… something about that. Weren’t you chomping at the bit to write about that?”

“Well, yes, I had intended to write about that but I couldn’t find the right title,” I offered weakly.

soup

Delicious Tom Ka Gai, with galangal and chicken, very good for health

The truth is, that I have about 10 different subjects I want to write about, and the BEST study is surely there at the top. I have been trying to think about the angle I want to take on it, aside from just the obvious lack of attention it has gotten. I also plan to write about all the stuff I got up to this past spring and summer, including several conference presentations; a pilgrimage to what may arguably be the very birthplace of modern dendroclimatology as we know it, at Mesa Verde National Park; working with Utah State University scientists to reconstruct streamflow along the Wasatch Range; my 3 week backpacking trip with my brother, our childhood best friend and his early 20s son to the John Muir Trail in the Sierras, more than 3 decades after I had done it as an 18 year old; the proposals written and rejected over the summer; the trials and tribulations of a soft-money dendrochronologist. These are all things I intend to write about this season, along with covering the several trips I will be taking to Cambodia, Vietnam, China and Taiwan. I intend to write about all of these things, and I intend to write another proposal, even a paper or two, while I am here.  Of course, it is a possibility that I may just be paving a few more kilometers of road on that journey to hell. That remains to be seen.

On the road again

Tree Stories - Fri, 12/30/2011 - 09:31

Brendan Buckley’s research on tree rings is creating a record of climate spanning 700 years.

Brendan is off to Asia again. If you missed last year’s adventures catch up with previous Tree Stories. While we wait for this year’s blogs, take a  look at the images sent in by Brendan as he made his way to Asia.

airport

Sitting at the airport in Newark waiting to fly off to Asia on Dec 17, 2011

brendan-soup

First breakfast in Chiang Mai at Phyom Market, my favorite blood soup and the first thing I like to eat when i am jetlagged and wake up before light.

soup

A close up of Blood and spare rib soup. very delicious.

Hard Realities, Part 2

Tree Stories - Mon, 04/25/2011 - 08:59

The Hard Reality of Soft Money: Part 1

It is a love-hate relationship I have with the National Science Foundation (NSF). I love them when they accept my grant proposals and I hate them when they don’t. In fairness, the majority of the time my proposals have been rejected (and it is the majority of my proposals that have been rejected) I can clearly see the reasoning behind it, because for the most part the system works as it is supposed to. As I noted before it is a competitive business, and some really brilliant people are competing against me, and this number increases every year (in direct proportion to my decreasing success rate). There are times when I have gotten reviews back that make me think the reviewers had no idea what they were talking about and I completely disagree with their assessments, and other times where I felt I was personally attacked. I have also been mystified when I got funded for a proposal I was convinced was not my best effort, so it really works both ways. Most of the time I feel the system is fair and I accept when I haven’t been good enough to make the grade. That is the nature of the beast that is the world of science funding and I am happy to play by the rules of the game.

Recently I had two perplexing exchanges with NSF. In the first instance, we got reviews back on a proposal I was included on (not as the lead principal investigator (PI))  that got the highest recommendation from the panel for funding. The peer reviews were mostly excellent and our proposal landed in the top 15 percent of the proposals based on the panel rankings. Then the program director, having decided to fund the top 20 percent of proposals in that batch, rejected ours from the chosen few, in spite of the recommendation of the panel to fund our proposal based on peer review. I am sure he had his reasons for doing so, but these weren’t explained to us in any way that I am aware of. If I had been lead PI, I would have been spitting fire, but the lead PI calmly allowed the issue to die a quiet death, which was the correct and adult decision (“live to fight another day” and all of that), though I would have at least asked for an explanation.

The second issue was more perplexing, involving a proposal that I am the lead PI on. In this case the program director decided not to even send our proposal out for review because we didn’t format the biosketch for one of my foreign co-PIs exactly right (we omitted a section heading). To be fair there are clear guidelines for such formatting, but we weren’t terribly far off from what is required. It seemed patently unfair to be rejected for a very minor infraction, and not at all in keeping with the spirit of the rules. I worked so hard to get this proposal submitted on time that I felt compelled to complain and lobby the program to reconsider. To my utter surprise they did reconsider (the squeaky wheel and all of that), and my proposal is now at the mercy of the peer review process, but at least it has a fighting chance to sink or swim on its merits. I believe that this is a really solid proposal, cutting edge even, and I would hate to see it not even get into the ring, as it were, regardless of its fate once it gets there. I think this example illustrates that the spirit of the review system is alive and well, when you can make your case on a matter such as this, and the very overtaxed “powers that be” at NSF can actually be persuaded. The love end of my relationship was, at least until the next rejection, restored.

One of the comments to my last entry regarding this matter was by another blogger, Eli Rabbet, who wrote:

As a hard money person who reviews soft money grants over the last 20 years I have noticed an increase in the number of proposals and a decrease in proposal quality as the soft money folk chip themselves up into smaller and smaller pieces (seriously 3 percent on one proposal).  I have seen people chew themselves up as funding shrinks. Because you have to write more proposals, less time is spent doing science. I have remarked on this in my usual quiet way to a number of program managers.

Eli makes a good point, and I agree with him to a large extent. We do have to spread ourselves very thin, taking too few months per project and having to juggle several projects at a time, each with their own suite of administrative duties (and these duties increase in number every year). We spend less time “doing our science” than we would like to, and more time fulfilling an increasingly long list of administrative requirements attached to less money per project. But I still defend this system of science as perhaps the best terrible system we can come up with. If we received full support we might find the creative energy needed out of stark necessity, but few of us would complain about the increase in freedom to research without the constant anxiety about funding. As I said before, the system is by no means perfect. But it is the system we’ve got, and so far (knock wood) I have kept the lights on and the heat cranking.

More worrying to me than the system we are using, however, is the increasing anti-science clamor that is permeating our society. That is the biggest threat to getting good science results per dollar invested. We have always used our NSF to encourage the freest of thinking to take place. Instead of putting out strongly mission-driven calls for proposals, the NSF has always given miles of latitude for free thinking scientists to push the envelope of their respective fields. That is what put U.S. science at the forefront of global research, and it makes a compelling argument for increasing our commitment to science rather than decreasing it. Time will tell how far this trend continues, but we are all watching it closely. Soft money institutes like ours are finding it increasingly difficult to retain the brightest young scientists who understandably are going where the hard money is.

I have been terribly busy since my return from Asia two months ago, and this blog has been nearly mothballed during that time. But I have a few things I do want to write about, so for those who haven’t lost faith stay tuned.

How Volcanoes Can Change the World - CNN

TRL Featured News - Fri, 04/16/2010 - 09:24
Lamont scientist Rosanne D'Arrigo discusses the global impact on climate from Iceland's Laki volcano eruption in 1783-84.
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What happened at Angkor Wat? - The Washington Post

TRL Featured News - Sat, 04/03/2010 - 11:00
Discusses study led by Lamont scientist Brendan Buckley.
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Drought and flooding led to collapse of Angkor - Los Angeles Times

TRL Featured News - Wed, 03/31/2010 - 11:00
Discusses new study led by LDEO scientist Brendan Buckley.
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Hydrothermal Vents Sometimes Colonized From Afar - Science News

TRL Featured News - Fri, 02/26/2010 - 16:46
At that rate, a larva could be wafted about 300 kilometers in a month, said Andreas Thurnherr, a physical oceanographer at the Lamont-Doherty Earth Observatory in Palisades, N.Y. He and a colleague reported analyses of currents along the East Pacific Rise at the meeting on the same day as Mullineaux’s presentation.
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