#!/usr/bin/perl

#======================================================================

#                    E D I T P D 0 

#                    doc: Mon Nov 25 20:24:31 2013

#                    dlm: Wed Mar 14 21:15:51 2018

#                    (c) 2013 A.M. Thurnherr

#                    uE-Info: 417 0 NIL 0 0 72 2 2 4 NIL ofnI

#======================================================================

# edit RDI PD0 file, e.g. to replace pitch/roll/heading with external values

# NOTES:

#

#	- editing instructions can be provided either in an editing file (primarily

#	  for ensemble-specific editing), or with the -x option on the command line

#	  (only or editing applied to all ensembles)

#

#	- Data-Editing Library:

#		p(<pitch>)				set pitch value (RDI not gimbal pitch) of current ensemble

#		r(<roll>)				set roll alue value of current ensemble

#		h(<heading>)			set heading alue value of current ensemble

#

#		swap_beams(<b1>,<b2>)	swap data from beams b1 and b2

#									- input in beam coords required

#									- beam rotation is equivalent to 3 consecutive beam swaps

#									- basic BT data are swapped as well (not RL and not SIGNAL_STRENGTH)

#

#		earth2beam()			transform beam to earth coordinates

#									- does not handle bin-remapping

#									- input in earth coords required

#

#		beam2earth()			transform earth to beam coordinates

#									- does not handle bin-remapping

#									- input in beam coords required

#

#		instrument2beam()		transform instrument to earth coordinates

#									- does not handle bin-remapping

#									- input in instrument coords required

#

#		ensure_UL()				correct data for wrong transducer orientation

#		ensure_DL()					- sets correct flag & negates roll value

#

#		dealias(<WV lim[m/s]>) 	correct data for erroneously low WV setting

#									- HEURISTIC, i.e. may not work

#

#	- -x notes:

#		- multiple perl expressions can be combined with ,

#

#	- Edit File Syntax:

#		- # comments ignored

#		- empty lines ignored

#       - [space] <ensemble-number|*> <space> <perl-expr>

#		- Examples:

#       	162     p(3), r(4), h(3.14)

# HISTORY:

#   Nov 25, 2013: - created

#   Dec 18, 2015: - added switch_beams()

#                 - added -x

#	Jan  9, 2016: - renamed switch_beams() to swap_beams()

#				  - wrote documentation

#				  - change output data-source ID from 0x7F to 0xE0

#				  - updated getopts to current perl version

#				  - adapted to [ADCP_tools_lib.pl]

#	Feb 15, 2016: - added ensure_UL() ensure_DL()

#	Feb 23, 2016: - added -k

#	Feb 26, 2016: - added basic BT data to swap_beams()

#				  - added earth2beam()

#	Apr 12, 2016: - added instrument2beam()

#	Jun  3, 2016: - added beam2earth()

#				  - BUG: instrument2earth() set wrong flag

#	Jun  8, 2016: - adapted to new interface of velInstrumentToBeam()

#				  - added %-good to beam2earth and earth2beam

#				  - made single-ping ensemble requirement for most routines

#	Jul 12, 2016: - updated ensure_{DL,UL} routines

#	Nov 15, 2016: - BUG: ensure_{DL,UL} routines did not negate heading data

#	Jul 27, 2017: - began working on dealias()

#	Dec  6, 2017: - cosmetics

use Getopt::Std;

($ADCP_TOOLS) = ($0 =~ m{(.*/)[^/]+});

$ADCP_tools_minVersion = 2.1; 

require "$ADCP_TOOLS/ADCP_tools_lib.pl";

$USAGE = "$0 @ARGV";

die("Usage: $0 " .

    '-e) <edit-file> | -x) <expr> ' .

    '[-k)eep original data-source id] ' .

    "<input file> <output file>\n")

        unless (&getopts('ke:x:') && @ARGV == 2);

die("$0: -e <edit-file> or -x <expr> required\n")

    unless (defined($opt_x) || -r $opt_e);

print(STDERR "Reading $ARGV[0]...");                # read data

readData($ARGV[0],\%dta);

printf(STDERR "done (%d complete ensembles)\n",

	scalar(@{$dta{ENSEMBLE}}));

#----------------------------------------------------------------------

print(STDERR "Editing Data...");                

#--------------------------------------------------

# Data Editing Library

#--------------------------------------------------

#--------------------------------------------------

# override pitch/roll/heading

#--------------------------------------------------

sub p($) { $dta{ENSEMBLE}[$e]->{PITCH} = $_[0]; return 1; }

sub r($) { $dta{ENSEMBLE}[$e]->{ROLL} = $_[0]; return 1; }

sub h($) { $dta{ENSEMBLE}[$e]->{HEADING} = $_[0]; return 1;}

#--------------------------------------------------

# correct data for erroneously low WV limit

#--------------------------------------------------

{ my(@target);												# static scope, undef initially

sub dealias_V0($)

{

	my($WV) = @_;

	if (@target) {											# dealias everything but first ensemble

		for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {

			for (my($beam)=0; $beam<4; $beam++) {

				next unless defined($dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam]);

				my($dealiased) = 0;

				$dealiased = ($dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam] - 2*$WV)

					if ($dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam] > 0);

				$dealiased = ($dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam] + 2*$WV)

					if ($dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam] < 0);

				if (abs($target[$beam]-$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam]) >

					abs($target[$beam]-$dealiased)) {

						$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam] = undef; #$dealiased;

						$dealiased++;

				}

			}

    	}

    } else { # @target is undef

    	$dealiased = 0;

    }

	@target = (0,0,0,0);									# calc ref-lr average target for next ens

	for (my($bin)=1; $bin<=5; $bin++) {						# should work even if N_BINS < 5

		for (my($beam)=0; $beam<4; $beam++) {

			$target[$beam] += $dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam]/4

				if defined($dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$beam]);

		}

    }

    return 1;

}

} # static scope

#--------------------------------------------------

# override transducer orientation

#

#	These routines are intended to correct ADCP data for

#	erroneous orientation switch readings, primarily because

#	of a stuck switch.

#		Roll: Based on text from the coord trans manual,

#			  it seems likely that the roll data need to

#			  be negated. In case of 2007(?) CLIVAR I08S

#			  profile #1 w gets much better with negated

#			  roll. Also, in 2016 CLIVAR P18 profile 003

#			  the instrument-offset calculation from

#			  compass and pitch/roll only agree with the

#			  roll negated.

#		Hdg: Based on the time-series of headings recorded

#		     during P18 profile 003 the heading needs

#			 to be negated. Doing so yields a good profile.

#--------------------------------------------------

sub ensure_DL()

{

	if ($dta{ENSEMBLE}[$e]->{XDUCER_FACING_UP}) {

		$dta{ENSEMBLE}[$e]->{ROLL} *= -1;

		$dta{ENSEMBLE}[$e]->{HEADING} *= -1; 

		$dta{ENSEMBLE}[$e]->{HEADING} += 360

			if ($dta{ENSEMBLE}[$e]->{HEADING} < 0);

		$dta{ENSEMBLE}[$e]->{XDUCER_FACING_DOWN} = 1;

		$dta{ENSEMBLE}[$e]->{XDUCER_FACING_UP} = undef;

	}

	return 1;

}

sub ensure_UL()

{

	if ($dta{ENSEMBLE}[$e]->{XDUCER_FACING_DOWN}) {

		$dta{ENSEMBLE}[$e]->{ROLL} *= -1;

		$dta{ENSEMBLE}[$e]->{HEADING} *= -1; 

		$dta{ENSEMBLE}[$e]->{HEADING} += 360

			if ($dta{ENSEMBLE}[$e]->{HEADING} < 0);

		$dta{ENSEMBLE}[$e]->{XDUCER_FACING_UP} = 1;

		$dta{ENSEMBLE}[$e]->{XDUCER_FACING_DOWN} = undef;

	}

	return 1;

}

#--------------------------------------------------

# swap data from two mis-connected beams

#--------------------------------------------------

sub swap_beams($$)

{

	my($b1,$b2) = @_;

	my($tmp);

#	print(STDERR "\n entering swap_beams($b1,$b2) for ens = $e...");

	die("$ARGV[0]: beam-coordinate data required\n")

		unless ($dta{BEAM_COORDINATES});

	die("$ARGV[0]: single-ping ensembles required\n")

		unless ($dta{PINGS_PER_ENSEMBLE} == 1);

	if ($dta{BT_PRESENT}) {

		$tmp = $dta{ENSEMBLE}[$e]->{BT_RANGE}[$b1-1];

		$dta{ENSEMBLE}[$e]->{BT_RANGE}[$b1-1] = $dta{ENSEMBLE}[$e]->{BT_RANGE}[$b2-1];

		$dta{ENSEMBLE}[$e]->{BT_RANGE}[$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{BT_VELOCITY}[$b1-1];

		$dta{ENSEMBLE}[$e]->{BT_VELOCITY}[$b1-1] = $dta{ENSEMBLE}[$e]->{BT_VELOCITY}[$b2-1];

		$dta{ENSEMBLE}[$e]->{BT_VELOCITY}[$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{BT_CORRELATION}[$b1-1];

		$dta{ENSEMBLE}[$e]->{BT_CORRELATION}[$b1-1] = $dta{ENSEMBLE}[$e]->{BT_CORRELATION}[$b2-1];

		$dta{ENSEMBLE}[$e]->{BT_CORRELATION}[$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{BT_EVAL_AMPLITUDE}[$b1-1];

		$dta{ENSEMBLE}[$e]->{BT_EVAL_AMPLITUDE}[$b1-1] = $dta{ENSEMBLE}[$e]->{BT_EVAL_AMPLITUDE}[$b2-1];

		$dta{ENSEMBLE}[$e]->{BT_EVAL_AMPLITUDE}[$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{BT_PERCENT_GOOD}[$b1-1];

		$dta{ENSEMBLE}[$e]->{BT_PERCENT_GOOD}[$b1-1] = $dta{ENSEMBLE}[$e]->{BT_PERCENT_GOOD}[$b2-1];

		$dta{ENSEMBLE}[$e]->{BT_PERCENT_GOOD}[$b2-1] = $tmp;

    }		                

	for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {

		$tmp = $dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$b1-1];

		$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$b1-1] = $dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$b2-1];

		$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin][$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{CORRELATION}[$bin][$b1-1];

		$dta{ENSEMBLE}[$e]->{CORRELATION}[$bin][$b1-1] = $dta{ENSEMBLE}[$e]->{CORRELATION}[$bin][$b2-1];

		$dta{ENSEMBLE}[$e]->{CORRELATION}[$bin][$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{ECHO_AMPLITUDE}[$bin][$b1-1];

		$dta{ENSEMBLE}[$e]->{ECHO_AMPLITUDE}[$bin][$b1-1] = $dta{ENSEMBLE}[$e]->{ECHO_AMPLITUDE}[$bin][$b2-1];

		$dta{ENSEMBLE}[$e]->{ECHO_AMPLITUDE}[$bin][$b2-1] = $tmp;

		$tmp = $dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][$b1-1];

		$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][$b1-1] = $dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][$b2-1];

		$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][$b2-1] = $tmp;

	}

	return 1;

}

#--------------------------------------------------

# transform earth to beam coordinates

#--------------------------------------------------

{ my($checked);

	sub earth2beam()

	{

		unless ($checked) {

			die("$ARGV[0]: earth-coordinate data required\n")

				unless ($dta{EARTH_COORDINATES});

			die("$ARGV[0]: single-ping ensembles required\n")

				unless ($dta{PINGS_PER_ENSEMBLE} == 1);

			$dta{BEAM_COORDINATES} = 1; undef($dta{EARTH_COORDINATES});

			$checked = 1;

		}

		for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {

			if ($dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][3] == 100) {			# 4-beam solution

               	@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]} =

					velEarthToBeam(\%dta,$e,@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]});

				@{$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin]} = (100,100,100,100);

			} else {															# 3-beam solution or no solution

				undef(@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]});

				@{$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin]} = (0,0,0,0);

			}

		}

		return 1;

	}

}

#--------------------------------------------------

# transform instrument to beam coordinates

#--------------------------------------------------

{ my($checked);

	sub instrument2beam()

	{

		unless ($checked) {

			die("$ARGV[0]: instrument-coordinate data required\n")

				unless ($dta{INSTRUMENT_COORDINATES});

			die("$ARGV[0]: single-ping ensembles required\n")

				unless ($dta{PINGS_PER_ENSEMBLE} == 1);

			$dta{BEAM_COORDINATES} = 1; undef($dta{INSTRUMENT_COORDINATES});

			$checked = 1;

		}

		for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {

			@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]} =

				velInstrumentToBeam(\%dta,$e,@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]});

		}

		return 1;

	}

}

#--------------------------------------------------

# transform instrument to earth coordinates

#--------------------------------------------------

{ my($checked);

	sub instrument2earth()

	{

		unless ($checked) {

			die("$ARGV[0]: instrument-coordinate data required\n")

				unless ($dta{INSTRUMENT_COORDINATES});

			die("$ARGV[0]: single-ping ensembles required\n")

				unless ($dta{PINGS_PER_ENSEMBLE} == 1);

			$dta{EARTH_COORDINATES} = 1; undef($dta{INSTRUMENT_COORDINATES});

			$checked = 1;

		}

		for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {

			@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]} =

				velInstrumentToEarth(\%dta,$e,@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]});

		}

		return 1;

	}

}

#--------------------------------------------------

# transform beam to earth coordinates

#--------------------------------------------------

{ my($checked);

	sub beam2earth()

	{

		unless ($checked) {

			die("$ARGV[0]: beam-coordinate data required\n")

				unless ($dta{BEAM_COORDINATES});

			die("$ARGV[0]: single-ping ensembles required\n")

				unless ($dta{PINGS_PER_ENSEMBLE} == 1);

			$dta{EARTH_COORDINATES} = 1; undef($dta{BEAM_COORDINATES});

			$checked = 1;

		}

		for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {

			@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]} =

				velBeamToEarth(\%dta,$e,@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]});

			$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][0] = 100*$RDI_Coords::threeBeamFlag;	# 3-beam solution

			$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][1] = 0;								# error velocity not checked

			$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][2] =									# no solution -> more than 1 bad beam

								@{$dta{ENSEMBLE}[$e]->{VELOCITY}[$bin]} ? 0 : 100;

			$dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][2] =									# 4-beam solution

								100 -  $dta{ENSEMBLE}[$e]->{PERCENT_GOOD}[$bin][0];

		}

		return 1;

	}

}

#--------------------------------------------------

# Main Routine

#--------------------------------------------------

if (defined($opt_x)) {															# edit instructions on the command line

	push(@EE,'*');

	my($id) = ($opt_x =~ m/^([A-Z]+)\s/);										# e.g. PITCH, ROLL, HEADING

	$opt_x = sprintf('$dta{ENSEMBLE}[$e]->{%s}',$id)

		if defined($id);

	push(@EX,$opt_x);

}		

if (defined($opt_e)) {															# edit instructions in edit file

	open(EF,$opt_e) || die("$opt_e: $!\n");

	while (<EF>) {

		s/\#.*//;

		next if m/^\s+$/;

		my($ens,$expr) = m/^\s*(\*|\d+)\s+(.*)$/;

		my($id) = ($expr =~ m/^([A-Z]+)\s/);									# e.g. PITCH, ROLL, HEADING

		$expr = sprintf('$dta{ENSEMBLE}[$e]->{%s}',$id)

			if defined($id);

		push(@EE,$ens);

		push(@EX,$expr);

	}

	close(EF);

}

for (local($e)=my($eei)=0; $e<@{$dta{ENSEMBLE}}; $e++) {						# local() needed for p(), r(), h()

	$dta{ENSEMBLE}[$e]->{DATA_SOURCE_ID} = 0xE0									# mark all ensembles except first

		unless ($opt_k || $e==0);

	if ($EE[$eei] eq '*' || $EE[$eei] == $dta{ENSEMBLE}[$e]->{NUMBER}) {		# match => edit

		eval($EX[$eei]) || die("$@ while executing <$EX[$eei]>\n");

	} elsif ($EE[$eei] > $dta{ENSEMBLE}[$e]->{NUMBER}) {						# next edit later in file => skip

		next;

	} else {																	# need next edit

		$eei++;

		last if ($eei >= @EE);

		redo;

	}

}

print(STDERR "done\n");

#----------------------------------------------------------------------

print(STDERR "Writing $ARGV[1]...");				# write data

writeData($ARGV[1],\%dta);

print(STDERR "done\n");

exit(0);