mkProfile
author A.M. Thurnherr <athurnherr@yahoo.com>
Thu, 07 May 2015 13:09:03 +0000
changeset 23 fb0c269b1eaa
parent 21 0b5bbe60131c
child 33 307630665c6c
permissions -rwxr-xr-x
V1.2 release candidate
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     1
#!/usr/bin/perl
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     2
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     3
#                    M K P R O F I L E 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     4
#                    doc: Sun Jan 19 18:55:26 2003
23
fb0c269b1eaa V1.2 release candidate
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 21
diff changeset
     5
#                    dlm: Sun Mar 22 10:22:46 2015
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     6
#                    (c) 2003 A.M. Thurnherr
23
fb0c269b1eaa V1.2 release candidate
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 21
diff changeset
     7
#                    uE-Info: 91 63 NIL 0 0 72 10 2 4 NIL ofnI
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     8
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     9
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    10
# Make an LADCP Profile by Integrating W (similar to Firing's scan*).
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    11
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    12
# HISTORY:
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    13
#	Jan 19, 2003: - written in order to test the RDI libs
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    14
#	Jan 20, 2003: - added ensemble number
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    15
#	Jan 21, 2003: - added horizontal integration
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    16
#	Jan 22, 2003: - corrected magnetic declination
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    17
#	Jan 23, 2003: - added -F)ilter
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    18
#	Jan 24, 2003: - added more %PARAMs; started integration from 1st bin
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    19
#				  - added -g, -f, battery status
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    20
#	Jan 25, 2003: - added more %PARAMs
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    21
#	Feb  1, 2003: - BUG: bottom-track quality checking was bad
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    22
#	Feb  8, 2003: - allowed for array-indices on -f
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    23
#	Feb  9, 2003: - added 50% goodvelbin
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    24
#				  - removed unknown-field err on -f to allow -f W
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    25
#	Feb 10, 2003: - changed initialization depth to 0m
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    26
#				  - changed %bottom_depth to %max_depth
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    27
#	Feb 11, 2003: - changed sign of magnetic declination
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    28
#	Feb 12, 2003: - corrected BT-range scaling
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    29
#	Feb 14, 2003: - added %pinging_hours, %min_range
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    30
#				  - removed magnetic declination from default
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    31
#	Feb 26, 2004: - added earth coordinates
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    32
#	Mar  3, 2004: - removed requirement for -M on !-Q
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    33
#				  - corrected range-stats on earth coordinates
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    34
#	Mar  4, 2004: - added number of ensebles to output
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    35
#	Mar 11, 2004: - BUG: rename ACD -> ADC
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    36
#	Mar 12, 2004: - added %bottom_xmit_{current|voltage}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    37
#	Mar 16, 2004: - BUG: on -M u/v/x/y were wrong
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    38
#	Mar 17, 2004: - added error estimates on u/v/x/y
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    39
#				  - removed battery stuff (has to be done btw casts)
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    40
#	Mar 18, 2004: - totally re-did u/v integration
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    41
#	Mar 19, 2004: - re-designed u/v uncertainty estimation
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    42
#	Mar 28, 2004: - added MEAN_CORRELATION, MEAN_ECHO_AMPLITUDE
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    43
#	Sep 15, 2005: - changed BinRead library name
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    44
#				  - made max gap length variable
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    45
#	Sep 16, 2005: - re-did u,v,w uncertainties
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    46
#	Nov  8, 2005: - UNIXTIME => UNIX_TIME
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    47
#				  - added unix_time, secno, z_BT to default output
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    48
#	Dec  1, 2005: - moved profile-building code to [RDI_utils.pl]
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    49
#				  - changed -f syntax to allow name=FIELD
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    50
#				  - added %bin1_dist, %bin_length
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    51
#	Dec  8, 2005: - remove spaces from -f argument to allow multiline
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    52
#				    definitions in Makefiles
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    53
#	Nov 13, 2006: - BUG: end-of-cast depth had not been reported correctly
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    54
#				  - cosmetics
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    55
#	Nov 30, 2007: - adapted to 3-beam solutions
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    56
#	Dec 11, 2007: - adapted to earlier modifications (Sep 2007) of
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    57
#					[RDI_BB_Read.pl]
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    58
#	Dec 14, 2007: - replaced z by depth
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    59
#	Dec 17, 2007: - BUG: downcast flag was set incorrectly
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    60
#	Jan 24, 2008: - rotation had been output as degrees/s; to make it more
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    61
#				    consistent with pitch/roll, I changed it to simple degrees
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    62
#				  - added net rotations [deployment]/down/up/[recovery]
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    63
#	Apr  9, 2008: - added profile -B)ottom depth
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    64
#				  - BUG: depth of first bin was reported as beginning of cast
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    65
#	Oct 24, 2008: - added RANGE and RANGE_BINS fields
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    66
#	Mar 18, 2009: - BUG: pitch/roll calculation had typo
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    67
#				  - calc pitch/roll separately for down-/upcasts
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    68
#				  - removed approximations in pitch/roll calcs
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    69
#	Jul 30, 2009: - typo '<' removed from output
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    70
#				  - NaN => nan
3
ladcp@ladcp-mac.local
parents: 0
diff changeset
    71
#	Dec  8, 2010: - added zmax/zend labels to output
ladcp@ladcp-mac.local
parents: 0
diff changeset
    72
#	Dec 10, 2010: - made mkProfile exit with status 0 if no good ens found but -Q is set
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
    73
#	Dec 19, 2010: - finally made -A default and activated output file
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
    74
#	Jan  5, 2011: - made no-good-ensembles found test much more robust
7
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
    75
#	Jun 22, 2011: - added bandwith/power warnings
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
    76
#				  - added ping-interval calculation
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
    77
#				  - BUG: post-recovery rotations were always zero
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
    78
#	Sep  9, 2011: - BUG: range calculation for Earth coordinate data included bins without
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
    79
#						 valid velocities
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
    80
#	Sep 21, 2010: - added %rms_heave_acceleration
11
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 8
diff changeset
    81
#	Apr 12, 2013: - added -p
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
    82
#	May 10, 2013: - BUG: mkProfile bombed when ADCP file is truncated at deepest location
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
    83
#	May 14, 2013: - added heading to output
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
    84
#				  - added err_vel to output
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
    85
#				  - finally removed -d/-g
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
    86
#	Nov 25, 2013: - expunged checkEnsemble
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
    87
#	Feb 13, 2014: - added support set_range_lim()
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
    88
#	Mar  4, 2014: - added support to allow missing PITCH/ROLL/HEADING values
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
    89
#	May 24, 2014: - finally added (gimbal-)pitch & roll to default output
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
    90
#				  - renamed heading to hdg and pitchroll to tilt
23
fb0c269b1eaa V1.2 release candidate
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 21
diff changeset
    91
#	Mar 22, 2015: - made it work for moored time series as well
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    92
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    93
# NOTES:
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    94
#	- the battery values are based on transmission voltages (different
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    95
#	  from battery voltages) and reported without units (raw 8-bit a2d
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    96
#	  values)
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    97
#	- -B with the CTD max depth can be used to linearly scale the depths;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    98
#	  even so, the profile can have negative depths, in particular when
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    99
#	  the CTD is sent to a shallow depth first and then returned to the surface
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   100
#	  before beginning the cast
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   101
#	- in one case that I looked at (Anslope ][, cast 82), there are large
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   102
#	  depth errors, even when -B is used
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   103
#	- this utility works only approximately for uplookers (profile is
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   104
#	  roughly ok, but apparently contaminated by surface reflection,
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   105
#	  but stats are not ok; e.g. NBP0402 037U.prof)
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   106
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   107
$0 =~ m{(.*)/[^/]+}; 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   108
require "$1/RDI_BB_Read.pl";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   109
require "$1/RDI_Coords.pl";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   110
require "$1/RDI_Utils.pl";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   111
require "getopts.pl";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   112
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   113
$USAGE = "$0 @ARGV";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   114
die("Usage: $0 " .
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   115
	"[-Q)uiet] [-F)ilter <script>] " .
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   116
	"[require -4)-beam solutions] [-d)iscard <beam#>] [apply beamvel-m)ask <file>] " .
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   117
	"[-r)ef-layer <bin|1,bin|6>] [-n) vels <min|2>] " .
11
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 8
diff changeset
   118
	"[-e)rr-vel <max[0.1]] [-c)orrelation <min>] [-p)ct-good <min[100]>] " .
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   119
	"[max -g)ap <len>] " .
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   120
	"[output -f)ields <field[,...]> " .
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   121
	"[-M)agnetic <declination>] [profile -B)ottom <depth>] " .
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   122
	"<RDI file>\n")
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   123
		unless (&Getopts("4AB:F:M:Qd:g:r:n:e:c:f:m:p:") && @ARGV == 1);
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   124
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   125
$RDI_Coords::minValidVels = 4 if ($opt_4);			# no 3-beam solutions
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   126
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   127
require $opt_F if defined($opt_F);					# load filter
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   128
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   129
$opt_r = "1,6" 	unless defined($opt_r);				# defaults
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   130
$opt_n = 2	   	unless defined($opt_n);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   131
$opt_e = 0.1   	unless defined($opt_e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   132
$opt_c = 70	   	unless defined($opt_c);
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   133
$opt_g = 120	unless defined($opt_g);
11
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 8
diff changeset
   134
$opt_p = 100	unless defined($opt_p);
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   135
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   136
($minb,$maxb) = split(',',$opt_r);					# reference layer
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   137
die("$0: can't decode -r $opt_r\n") unless defined($maxb);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   138
                                        
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   139
print(STDERR "Reading $ARGV[0]...");				# read data
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   140
readData($ARGV[0],\%dta);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   141
print(STDERR "done\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   142
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   143
die("$ARGV[0]: not enough bins for choice of -r\n")	# enough bins?
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   144
	unless ($dta{N_BINS} >= $maxb);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   145
if ($dta{BEAM_COORDINATES}) {						# coords used
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   146
	$beamCoords = 1;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   147
} elsif (!$dta{EARTH_COORDINATES}) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   148
	die("$ARGV[0]: only beam and earth coordinates implemented so far\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   149
}
7
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   150
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   151
if (defined($opt_m) && -r $opt_m) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   152
	die("$ARGV[0]: -m only implemented for data collected in beam coordinates\n")
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   153
		unless ($beamCoords);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   154
	print(STDERR "Masking beam velocities as prescribed in $opt_m...");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   155
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   156
	open(BVM,$opt_m) || die("$opt_m: $!\n");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   157
	while (<BVM>) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   158
		s/#.*//;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   159
		s/^\s*$//;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   160
		next if ($_ eq '');
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   161
		my($fe,$te,$db) = split;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   162
		die("$opt_m: cannot decode $_\n")
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   163
			unless (numberp($fe) && numberp($te) && $te>=$fe && $db>=1 && $db<=4);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   164
		die("$0: assertion failed")
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   165
			unless ($dta{ENSEMBLE}[$fe-1]->{NUMBER} == $fe &&
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   166
					$dta{ENSEMBLE}[$te-1]->{NUMBER} == $te);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   167
		for (my($ens)=$fe-1; $ens<=$te-1; $ens++) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   168
			$nens++;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   169
			for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   170
				undef($dta{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$db-1]);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   171
			}
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   172
	    }       
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   173
    }
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   174
	close(BVM);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   175
	print(STDERR " $nens ensembles edited\n");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   176
}
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   177
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   178
if (defined($opt_d)) {								# discard entire beam
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   179
	die("$ARGV[0]: -d only implemented for data collected in beam coordinates\n")
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   180
		unless ($beamCoords);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   181
	print(STDERR "Discarding beam-$opt_d velocities...");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   182
    for (my($ens)=0; $ens<=$#{$dta{ENSEMBLE}}; $ens++) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   183
        for (my($bin)=0; $bin<$dta{N_BINS}; $bin++) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   184
            undef($dta{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$opt_d-1]);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   185
        }
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   186
    }       
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   187
	print(STDERR "done\n");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   188
}
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   189
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   190
if (defined($opt_M)) {								# magnetic declination
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   191
	$dta{HEADING_BIAS} = -1*$opt_M;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   192
} else {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   193
	$dta{HEADING_BIAS} = 0;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   194
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   195
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   196
ensure_BT_RANGE(\%dta);								# set BT_RANGE field if it is missing (old firmware bug)
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   197
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   198
if ($opt_f) {										# additional fields
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   199
	@f = split(',',$opt_f);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   200
	foreach $f (@f) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   201
		$f =~ s/\s//g;								# remove spaces
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   202
		@def = split('=',$f);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   203
		if (@def == 2) {							# name=field
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   204
			$addFields .= " {$def[0]}";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   205
			$f = $def[1];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   206
		} else {									# field
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   207
			$addFields .= " {$f}";
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   208
		}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   209
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   210
#	print(STDERR "addFields = $addFields\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   211
#	print(STDERR "\@f = @f\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   212
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   213
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   214
#======================================================================
7
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   215
# Step 0: Check data & Calculate Ping Rates
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   216
#======================================================================
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   217
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   218
unless ($dta{NARROW_BANDWIDTH}) {
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   219
	print(STDERR "WARNING: $0 WIDE BANDWIDTH!\n");
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   220
}
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   221
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   222
unless ($dta{TRANSMIT_POWER_HIGH}) {
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   223
	print(STDERR "WARNING: $0 LOW TRANSMIT POWER!\n");
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   224
}
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   225
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   226
printf(STDERR "# of ensembles        : %d\n",scalar(@{$dta{ENSEMBLE}}));
7
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   227
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   228
my($sdt1,$sdt2,$ndt);
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   229
my($mindt1) = my($mindt2) = 9e99;
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   230
my($maxdt1) = my($maxdt2) = 0;
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   231
for (my($e)=2; $e<=$#{$dta{ENSEMBLE}}; $e+=2,$ndt++) {
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   232
	my($dt1) = $dta{ENSEMBLE}[$e-1]->{UNIX_TIME} - $dta{ENSEMBLE}[$e-2]->{UNIX_TIME};
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   233
	my($dt2) = $dta{ENSEMBLE}[$e-0]->{UNIX_TIME} - $dta{ENSEMBLE}[$e-1]->{UNIX_TIME};
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   234
	$mindt1 = $dt1 if ($dt1 < $mindt1);
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   235
	$mindt2 = $dt2 if ($dt2 < $mindt2);
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   236
	$maxdt1 = $dt1 if ($dt1 > $maxdt1);
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   237
	$maxdt2 = $dt2 if ($dt2 > $maxdt2);
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   238
	$sdt1 += $dt1; $sdt2 += $dt2;
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   239
}
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   240
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   241
printf(STDERR "Ping intervals        : %.1fs/%.1fs",$sdt1/$ndt,$sdt2/$ndt);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   242
if ($maxdt1-$mindt1>=0.1 || $maxdt2-$mindt2>=0.1) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   243
	printf(STDERR " (%.1fs-%.1fs/%.1fs-%.1fs)\n",$mindt1,$maxdt1,$mindt2,$maxdt2);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   244
} else {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   245
	print(STDERR "\n");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   246
}
7
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   247
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   248
#======================================================================
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   249
# Step 1: Integrate w & determine water depth 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   250
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   251
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   252
($firstgood,$lastgood,$atbottom,$w_gap_time,$zErr,$maxz,$rms_heave_accel) =
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   253
	mk_prof(\%dta,0,$opt_F,$minb,$maxb,$opt_c,$opt_e,$opt_g,$opt_p);
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   254
21
0b5bbe60131c version sent to P16N
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 18
diff changeset
   255
if ($lastgood == $atbottom) {
0b5bbe60131c version sent to P16N
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 18
diff changeset
   256
	print(STDERR "$ARGV[0]: truncated file (ends at max depth)\n")
0b5bbe60131c version sent to P16N
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 18
diff changeset
   257
} elsif (($atbottom > $firstgood) && ($lastgood > $atbottom)) {
0b5bbe60131c version sent to P16N
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 18
diff changeset
   258
	# all good
23
fb0c269b1eaa V1.2 release candidate
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 21
diff changeset
   259
} elsif ($lastgood > $firstgood) {
fb0c269b1eaa V1.2 release candidate
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 21
diff changeset
   260
	print(STDERR "$ARGV[0]: no bottom depth found\n")
fb0c269b1eaa V1.2 release candidate
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 21
diff changeset
   261
		unless ($atbottom > 0);
21
0b5bbe60131c version sent to P16N
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 18
diff changeset
   262
} else {
3
ladcp@ladcp-mac.local
parents: 0
diff changeset
   263
	if ($opt_Q) {
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   264
		print(STDERR "$ARGV[0]: no valid cast data found\n");
3
ladcp@ladcp-mac.local
parents: 0
diff changeset
   265
		exit(0);
ladcp@ladcp-mac.local
parents: 0
diff changeset
   266
    } else {
21
0b5bbe60131c version sent to P16N
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 18
diff changeset
   267
		die(sprintf("$ARGV[0]: no valid cast data found (firstgood=%d atbottom=%d lastgood=%d)\n",$firstgood,$atbottom,$lastgood));
3
ladcp@ladcp-mac.local
parents: 0
diff changeset
   268
	}
ladcp@ladcp-mac.local
parents: 0
diff changeset
   269
}
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   270
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   271
if (defined($opt_B)) {										# scale Z
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   272
	my($zscale) = $opt_B / ($dta{ENSEMBLE}[$atbottom]->{DEPTH} -# downcast
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   273
				     	    $dta{ENSEMBLE}[$firstgood]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   274
#	printf(STDERR "scaling downcast depths by %.2f\n",$zscale);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   275
	for (my($e)=$firstgood; $e<$atbottom; $e++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   276
		next unless defined($dta{ENSEMBLE}[$e]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   277
		$dta{ENSEMBLE}[$e]->{DEPTH} =
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   278
			$dta{ENSEMBLE}[$firstgood]->{DEPTH} + $zscale *
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   279
				($dta{ENSEMBLE}[$e]->{DEPTH}-$dta{ENSEMBLE}[$firstgood]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   280
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   281
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   282
	$zscale = $opt_B / ($dta{ENSEMBLE}[$atbottom]->{DEPTH} -	# upcast
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   283
				 		$dta{ENSEMBLE}[$lastgood]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   284
#	printf(STDERR "scaling upcast depths by %.2f\n",$zscale);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   285
	for (my($e)=$atbottom; $e<=$lastgood; $e++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   286
		next unless defined($dta{ENSEMBLE}[$e]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   287
		$dta{ENSEMBLE}[$e]->{DEPTH} =
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   288
			$dta{ENSEMBLE}[$firstgood]->{DEPTH} + $zscale *
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   289
				($dta{ENSEMBLE}[$e]->{DEPTH}-$dta{ENSEMBLE}[$lastgood]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   290
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   291
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   292
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   293
set_range_lim(\%dta);										# set {range_lim} field
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   294
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   295
($water_depth,$sig_wd) =									# sea bed
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   296
	find_seabed(\%dta,$atbottom,$beamCoords);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   297
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   298
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   299
# Step 2: Integrate u & v
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   300
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   301
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   302
sub ref_lr_uv($$$)									# calc ref-level u/v
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   303
{
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   304
	my($ens,$z,$water_depth) = @_;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   305
	my($i,$n,@v,@goodU,@goodV);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   306
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   307
	$water_depth = 99999 unless defined($water_depth);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   308
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   309
	for ($i=$minb; $i<=$maxb; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   310
		next if ($dta{ENSEMBLE}[$ens]->{CORRELATION}[$i][0] < $opt_c ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   311
				 $dta{ENSEMBLE}[$ens]->{CORRELATION}[$i][1] < $opt_c ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   312
				 $dta{ENSEMBLE}[$ens]->{CORRELATION}[$i][2] < $opt_c ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   313
				 $dta{ENSEMBLE}[$ens]->{CORRELATION}[$i][3] < $opt_c);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   314
		if ($beamCoords) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   315
			next if ($dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][0] < 100 ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   316
					 $dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][1] < 100 ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   317
					 $dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][2] < 100 ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   318
					 $dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][3] < 100);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   319
			@v = velInstrumentToEarth(\%dta,$ens,
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   320
					velBeamToInstrument(\%dta,
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   321
						@{$dta{ENSEMBLE}[$ens]->{VELOCITY}[$i]}));
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   322
		} else {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   323
			next if ($dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][0] > 0 ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   324
					 $dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][1] > 0 ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   325
					 $dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][2] > 0 ||
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   326
					 $dta{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$i][3] < 100);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   327
			@v = velApplyHdgBias(\%dta,$ens,
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   328
					@{$dta{ENSEMBLE}[$ens]->{VELOCITY}[$i]});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   329
		}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   330
		next if (!defined($v[3]) || abs($v[3]) > $opt_e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   331
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   332
#		Martin's BT routines show strong shear just above sea bed
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   333
#		=> skip lowest 20m.
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   334
		if (defined($v[0])) {							# valid u,v
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   335
			if ($dta{ENSEMBLE}[$ens]->{XDUCER_FACING_UP}) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   336
				if ($z - $dta{DISTANCE_TO_BIN1_CENTER}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   337
					   - $i*$dta{BIN_LENGTH} > 0) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   338
					push(@goodU,$v[0]); push(@goodV,$v[1]);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   339
					$dta{ENSEMBLE}[$ens]->{U} += $v[0];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   340
					$dta{ENSEMBLE}[$ens]->{V} += $v[1];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   341
					$n++;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   342
			   }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   343
			} else {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   344
				if ($z + $dta{DISTANCE_TO_BIN1_CENTER}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   345
					   + $i*$dta{BIN_LENGTH} < $water_depth-20) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   346
					push(@goodU,$v[0]); push(@goodV,$v[1]);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   347
					$dta{ENSEMBLE}[$ens]->{U} += $v[0];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   348
					$dta{ENSEMBLE}[$ens]->{V} += $v[1];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   349
					$n++;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   350
			   }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   351
			}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   352
		}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   353
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   354
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   355
	if ($n >= 2) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   356
		my(@sumsq) = (0,0);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   357
		$dta{ENSEMBLE}[$ens]->{U} /= $n;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   358
		$dta{ENSEMBLE}[$ens]->{V} /= $n;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   359
		for ($i=0; $i<$n; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   360
			$sumsq[0] += ($dta{ENSEMBLE}[$ens]->{U}-$goodU[$i])**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   361
			$sumsq[1] += ($dta{ENSEMBLE}[$ens]->{V}-$goodV[$i])**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   362
		}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   363
		$dta{ENSEMBLE}[$ens]->{U_ERR} = sqrt($sumsq[0])/($n-1);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   364
		$dta{ENSEMBLE}[$ens]->{V_ERR} = sqrt($sumsq[1])/($n-1);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   365
    } else {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   366
		$dta{ENSEMBLE}[$ens]->{U} = undef;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   367
		$dta{ENSEMBLE}[$ens]->{V} = undef;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   368
    }    	
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   369
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   370
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   371
#----------------------------------------------------------------------
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   372
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   373
($x,$y) = (0,0);											# init
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   374
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   375
$dta{ENSEMBLE}[$firstgood]->{X} = $dta{ENSEMBLE}[$firstgood]->{X_ERR} = 0;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   376
$dta{ENSEMBLE}[$firstgood]->{Y} = $dta{ENSEMBLE}[$firstgood]->{Y_ERR} = 0;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   377
$prevgood = $firstgood;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   378
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   379
for ($e=$firstgood+1; defined($opt_M)&&$e<=$lastgood; $e++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   380
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   381
	#--------------------------------------------------
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   382
	# within profile: both $firstgood and $prevgood set
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   383
	#--------------------------------------------------
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   384
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   385
	ref_lr_uv($e,$dta{ENSEMBLE}[$e]->{DEPTH},$water_depth)	# instrument vel
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   386
		if (defined($dta{ENSEMBLE}[$e]->{W}));
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   387
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   388
	if (!defined($dta{ENSEMBLE}[$e]->{U})) {				# gap
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   389
		$uv_gap_time += $dta{ENSEMBLE}[$e]->{UNIX_TIME} -
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   390
				   		$dta{ENSEMBLE}[$e-1]->{UNIX_TIME};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   391
		next;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   392
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   393
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   394
	my($dt) = $dta{ENSEMBLE}[$e]->{UNIX_TIME} -			# time step since
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   395
			  $dta{ENSEMBLE}[$prevgood]->{UNIX_TIME};		# ...last good ens
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   396
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   397
	#-----------------------------------
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   398
	# The current ensemble has valid u/v
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   399
	#-----------------------------------
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   400
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   401
	$x -= $dta{ENSEMBLE}[$prevgood]->{U} * $dt;			# integrate
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   402
	$xErr += ($dta{ENSEMBLE}[$prevgood]->{U_ERR} * $dt)**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   403
	$dta{ENSEMBLE}[$e]->{X} = $x;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   404
	$dta{ENSEMBLE}[$e]->{X_ERR} = sqrt($xErr);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   405
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   406
	$y -= $dta{ENSEMBLE}[$prevgood]->{V} * $dt;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   407
	$yErr += ($dta{ENSEMBLE}[$prevgood]->{V_ERR} * $dt)**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   408
	$dta{ENSEMBLE}[$e]->{Y} = $y;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   409
	$dta{ENSEMBLE}[$e]->{Y_ERR} = sqrt($yErr);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   410
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   411
	$prevgood = $e;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   412
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   413
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   414
unless (defined($dta{ENSEMBLE}[$lastgood]->{X})) {		# last is bad in u/v
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   415
	my($dt) = $dta{ENSEMBLE}[$lastgood]->{UNIX_TIME} -		# time step since
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   416
			  $dta{ENSEMBLE}[$prevgood]->{UNIX_TIME};		# ...last good ens
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   417
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   418
	$x -= $dta{ENSEMBLE}[$prevgood]->{U} * $dt;			# integrate
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   419
	$xErr += ($dta{ENSEMBLE}[$prevgood]->{U_ERR} * $dt)**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   420
	$dta{ENSEMBLE}[$lastgood]->{X} = $x;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   421
	$dta{ENSEMBLE}[$lastgood]->{X_ERR} = sqrt($xErr);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   422
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   423
	$y -= $dta{ENSEMBLE}[$prevgood]->{V} * $dt;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   424
	$yErr += ($dta{ENSEMBLE}[$prevgood]->{V_ERR} * $dt)**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   425
	$dta{ENSEMBLE}[$lastgood]->{Y} = $y;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   426
	$dta{ENSEMBLE}[$lastgood]->{Y_ERR} = sqrt($yErr);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   427
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   428
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   429
$firstgood++ if ($firstgood == 0);							# centered diff
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   430
$lastgood-- if ($lastgood == $#{$dta{ENSEMBLE}});			# in step 6
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   431
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   432
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   433
# Step 3: Calculate Uncertainties
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   434
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   435
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   436
# Time series of W_ERR indicate that errors are very large near the
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   437
# surface and near the sea bed, perhaps because of reflections.
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   438
# A reasonable estimate for typical uncertainty is therefore the mode
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   439
# of the std errors.
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   440
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   441
my(@histUErr,@histVErr,@histWErr);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   442
my($histRez) = 1e-4;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   443
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   444
for ($e=$firstgood; $e<=$lastgood; $e++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   445
	$histWErr[int($dta{ENSEMBLE}[$e]->{W_ERR}/$histRez+0.5)]++
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   446
		if defined($dta{ENSEMBLE}[$e]->{W_ERR});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   447
	$histUErr[int($dta{ENSEMBLE}[$e]->{U_ERR}/$histRez+0.5)]++
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   448
		if defined($dta{ENSEMBLE}[$e]->{U_ERR});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   449
	$histVErr[int($dta{ENSEMBLE}[$e]->{V_ERR}/$histRez+0.5)]++
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   450
		if defined($dta{ENSEMBLE}[$e]->{V_ERR});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   451
}	
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   452
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   453
my($max) = 0; my($mode);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   454
for (my($i)=0; $i<=$#histWErr; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   455
	next if ($histWErr[$i] < $max);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   456
	$max = $histWErr[$i]; $mode = $i;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   457
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   458
$wErr = $mode * $histRez if defined($mode);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   459
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   460
$max = 0; $mode = undef;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   461
for (my($i)=0; $i<=$#histUErr; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   462
	next if ($histUErr[$i] < $max);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   463
	$max = $histUErr[$i]; $mode = $i;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   464
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   465
$uErr = $mode * $histRez if defined($mode);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   466
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   467
$max = 0; $mode = undef;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   468
for (my($i)=0; $i<=$#histVErr; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   469
	next if ($histVErr[$i] < $max);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   470
	$max = $histVErr[$i]; $mode = $i;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   471
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   472
$vErr = $mode * $histRez if defined($mode);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   473
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   474
#print(STDERR "u: mu = $meanU / sigma = $uErr\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   475
#print(STDERR "v: mu = $meanV / sigma = $vErr\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   476
#print(STDERR "w: mu = $meanW / sigma = $wErr\n");
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   477
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   478
if (defined($opt_M)) {									# displacement errors
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   479
	$x_err = $uErr * $uv_gap_time + $dta{ENSEMBLE}[$lastgood]->{X_ERR};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   480
	$y_err = $vErr * $uv_gap_time + $dta{ENSEMBLE}[$lastgood]->{Y_ERR};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   481
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   482
$z_err = $wErr * $w_gap_time + $dta{ENSEMBLE}[$lastgood]->{DEPTH_ERR};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   483
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   484
#printf(STDERR "x_err = $dta{ENSEMBLE}[$lastgood]->{X_ERR} + %g\n",
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   485
#				$uErr * $uv_gap_time);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   486
#printf(STDERR "y_err = $dta{ENSEMBLE}[$lastgood]->{Y_ERR} + %g\n",
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   487
#				$vErr * $uv_gap_time);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   488
#printf(STDERR "z_err = $dta{ENSEMBLE}[$lastgood]->{DEPTH_ERR} + %g\n",
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   489
#				$wErr * $w_gap_time);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   490
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   491
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   492
# Step 4: Calculate Beam Range Stats
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   493
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   494
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   495
my($min_good_bins) = 999;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   496
my($worst_beam);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   497
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   498
sub count_good_vels($)								# count good vels
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   499
{
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   500
	my($ens) = @_;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   501
	my($good) = -1; my($this_worst_beam);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   502
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   503
	if ($beamCoords) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   504
		for (my($i)=0; $i<$dta{N_BINS}; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   505
			for (my($b)=0; $b<4; $b++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   506
				$good=$i,$this_worst_beam=$b,$nVels[$i][$b]++
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   507
					if defined($dta{ENSEMBLE}[$ens]->{VELOCITY}[$i][$b]);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   508
			}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   509
	    }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   510
	} else {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   511
		for (my($i)=0; $i<$dta{N_BINS}; $i++) {
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   512
			next unless defined($dta{ENSEMBLE}[$ens]->{VELOCITY}[$i][0]);
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   513
			for (my($b)=0; $b<4; $b++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   514
				$good=$i,$this_worst_beam=$b,$nVels[$i][$b]++
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   515
					if ($dta{ENSEMBLE}[$ens]->{CORRELATION}[$i][$b] >=
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   516
						$dta{MIN_CORRELATION});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   517
			}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   518
	    }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   519
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   520
	$min_good_ens=$ens, $min_good_bins=$good, $worst_beam=$this_worst_beam
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   521
		if ((!defined($water_depth) || 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   522
			  $dta{ENSEMBLE}[$ens]->{DEPTH} < $water_depth-200)
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   523
			&& $good >= 0 && $good < $min_good_bins);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   524
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   525
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   526
#----------------------------------------------------------------------
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   527
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   528
for ($e=$firstgood; $e<=$lastgood; $e++) {					# range
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   529
	my($i);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   530
	for ($i=0; $i<$dta{N_BINS}; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   531
		last if (defined($dta{ENSEMBLE}[$e]->{VELOCITY}[$i][0]) +
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   532
				 defined($dta{ENSEMBLE}[$e]->{VELOCITY}[$i][1]) +
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   533
				 defined($dta{ENSEMBLE}[$e]->{VELOCITY}[$i][2]) +
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   534
				 defined($dta{ENSEMBLE}[$e]->{VELOCITY}[$i][3]) < 3);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   535
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   536
	$dta{ENSEMBLE}[$e]->{RANGE_BINS} = $i;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   537
	$dta{ENSEMBLE}[$e]->{RANGE} =
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   538
		$dta{DISTANCE_TO_BIN1_CENTER} + $i * $dta{BIN_LENGTH};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   539
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   540
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   541
for ($e=$firstgood; $e<=$lastgood; $e++) {					# mean corr/amp
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   542
	$sumcor = $sumamp = $ndata = 0;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   543
	for (my($i)=0; $i<$dta{N_BINS}; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   544
		for (my($b)=0; $b<4; $b++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   545
			next unless ($dta{ENSEMBLE}[$e]->{CORRELATION}[$i][$b]);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   546
			$sumcor += $dta{ENSEMBLE}[$e]->{CORRELATION}[$i][$b];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   547
			$sumamp += $dta{ENSEMBLE}[$e]->{ECHO_AMPLITUDE}[$i][$b];
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   548
			$ndata++;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   549
		}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   550
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   551
	$dta{ENSEMBLE}[$e]->{MEAN_CORRELATION} = $sumcor/$ndata;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   552
	$dta{ENSEMBLE}[$e]->{MEAN_ECHO_AMPLITUDE} = $sumamp/$ndata;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   553
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   554
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   555
for ($e=$firstgood+50; $e<=$lastgood-50; $e++) {			# range stats
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   556
	count_good_vels($e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   557
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   558
for ($i=0; $i<$dta{N_BINS}; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   559
	for ($b=0; $b<4; $b++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   560
		$maxVels = $nVels[$i][$b] unless ($maxVels > $nVels[$i][$b]);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   561
	}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   562
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   563
for ($i=0; $i<$dta{N_BINS}; $i++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   564
	for ($b=0; $b<4; $b++) {
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   565
		$gb[$b] = $i if ($nVels[$i][$b] >= 0.8*$maxVels);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   566
    }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   567
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   568
$gb = ($gb[0]+$gb[1]+$gb[2]+$gb[3]) / 4;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   569
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   570
#======================================================================
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   571
# Step 5: Remove Ship Drift (probably not useful => removed)
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   572
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   573
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   574
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   575
# Step 6: Pitch, Roll, Rotation
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   576
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   577
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   578
# in case of PITCH/ROLL/HEADING data gaps (IMP data), the calculations
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   579
# are not entirely correct, as
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   580
# 	i)  the rotation implied by the pre-/post-gap headings is not counted
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   581
#	ii) the gappy ensembles are counted for calculating the rms vals
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   582
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   583
my($prrms,$dnprrms,$upprrms) = (0,0,0);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   584
my($rotrms,$prerot,$dnrot,$uprot,$postrot) = (0,0,0,0,0);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   585
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   586
sub rot($)
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   587
{
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   588
	my($e) = @_;
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   589
	return 0
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   590
		unless defined($dta{ENSEMBLE}[$e]->{HEADING}) && defined($dta{ENSEMBLE}[$e-1]->{HEADING});
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   591
	my($rot) = $dta{ENSEMBLE}[$e]->{HEADING} -
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   592
			   $dta{ENSEMBLE}[$e-1]->{HEADING};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   593
	$rot -= 360 if ($rot >  180);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   594
	$rot += 360 if ($rot < -180);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   595
	return $rot;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   596
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   597
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   598
for ($e=1; $e<$firstgood; $e++) {				# pre-deployment
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   599
	$prerot += rot($e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   600
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   601
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   602
for (; $e<= $atbottom; $e++) {					# downcast
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   603
	$dta{ENSEMBLE}[$e]->{TILT} =
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   604
		&angle_from_vertical($dta{ENSEMBLE}[$e]->{PITCH},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   605
						  	 $dta{ENSEMBLE}[$e]->{ROLL});
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   606
	$prrms += $dta{ENSEMBLE}[$e]->{TILT}**2
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   607
		if numberp($dta{ENSEMBLE}[$e]->{TILT});
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   608
				 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   609
	$dta{ENSEMBLE}[$e]->{ROTATION} = rot($e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   610
	$dnrot += $dta{ENSEMBLE}[$e]->{ROTATION};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   611
	$rotrms += $dta{ENSEMBLE}[$e]->{ROTATION}**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   612
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   613
$dnprrms = $prrms;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   614
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   615
for (; $e<=$lastgood; $e++) {					# upcast
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   616
	$dta{ENSEMBLE}[$e]->{TILT} =
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   617
		&angle_from_vertical($dta{ENSEMBLE}[$e]->{PITCH},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   618
						  	 $dta{ENSEMBLE}[$e]->{ROLL});
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   619
	$prrms += $dta{ENSEMBLE}[$e]->{TILT}**2
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   620
		if numberp($dta{ENSEMBLE}[$e]->{TILT});
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   621
				 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   622
	$dta{ENSEMBLE}[$e]->{ROTATION} = rot($e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   623
	$uprot += $dta{ENSEMBLE}[$e]->{ROTATION};
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   624
	$rotrms += $dta{ENSEMBLE}[$e]->{ROTATION}**2;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   625
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   626
$upprrms = $prrms - $dnprrms;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   627
7
e06925788055 post IWISE_2011
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 5
diff changeset
   628
for (; $e<=$#{$dta{ENSEMBLE}}; $e++) {			# post-recovery
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   629
	$postrot += rot($e);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   630
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   631
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   632
$prerot  /= 360;								# rotations, not degrees
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   633
$dnrot   /= 360;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   634
$uprot   /= 360;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   635
$postrot /= 360;
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   636
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   637
$prrms 	 = sqrt($prrms/($lastgood-$firstgood));
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   638
$dnprrms = sqrt($dnprrms/($atbottom-$firstgood));
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   639
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   640
if ($lastgood == $atbottom) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   641
	print(STDERR "WARNING: $0 NO UPCAST DATA\n");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   642
	$upprrms = nan;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   643
} else {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   644
	$upprrms = sqrt($upprrms/($lastgood-$atbottom));
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   645
}
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   646
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   647
$rotrms = sqrt($rotrms/($lastgood-$firstgood));
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   648
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   649
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   650
# PRODUCE OUTPUT
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   651
#======================================================================
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   652
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   653
printf(STDERR "Start of cast         : %s (#%5d) at %6.1fm\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   654
					$dta{ENSEMBLE}[$firstgood]->{TIME},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   655
					$dta{ENSEMBLE}[$firstgood]->{NUMBER},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   656
					$dta{ENSEMBLE}[$firstgood]->{DEPTH});
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   657
printf(STDERR "Bottom of cast (zmax) : %s (#%5d) at %6.1fm\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   658
					$dta{ENSEMBLE}[$atbottom]->{TIME},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   659
					$dta{ENSEMBLE}[$atbottom]->{NUMBER},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   660
					$dta{ENSEMBLE}[$atbottom]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   661
if (defined($water_depth)) {
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   662
	printf(STDERR "Seabed                :                      at %6.1fm (+-%dm)\n",$water_depth,$sig_wd);
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   663
} else {
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   664
	print(STDERR "Seabed                : not found\n");
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   665
}
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   666
printf(STDERR "End of cast (zend)    : %s (#%5d) at %6.1fm\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   667
					$dta{ENSEMBLE}[$lastgood]->{TIME},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   668
					$dta{ENSEMBLE}[$lastgood]->{NUMBER},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   669
					$dta{ENSEMBLE}[$lastgood]->{DEPTH});
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   670
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   671
printf(STDERR "Rel. Displacement     : x = %d(%d)m / y = %d(%d)m\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   672
					$dta{ENSEMBLE}[$lastgood]->{X}, $x_err, 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   673
					$dta{ENSEMBLE}[$lastgood]->{Y}, $y_err, 
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   674
				) if defined($opt_M);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   675
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   676
printf(STDERR "Cast Duration         : %.1f hours (pinging for %.1f hours)\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   677
					$dta{ENSEMBLE}[$lastgood]->{ELAPSED_TIME} / 3600,
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   678
					($dta{ENSEMBLE}[$#{$dta{ENSEMBLE}}]->{UNIX_TIME} -
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   679
						$dta{ENSEMBLE}[0]->{UNIX_TIME}) / 3600);
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   680
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   681
printf(STDERR "Minimum range         : %dm at ensemble %d, beam %d\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   682
				$dta{DISTANCE_TO_BIN1_CENTER} +
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   683
					$min_good_bins*$dta{BIN_LENGTH},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   684
				$dta{ENSEMBLE}[$min_good_ens]->{NUMBER},
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   685
				$worst_beam);
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   686
printf(STDERR "80%%-valid bins        : %.1f\n",$gb+1);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   687
printf(STDERR "80%%-valid range       : %dm\n",
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   688
				$dta{DISTANCE_TO_BIN1_CENTER} + $gb*$dta{BIN_LENGTH});
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   689
printf(STDERR "3-beam solutions      : $RDI_Coords::threeBeam_1 " .
3
ladcp@ladcp-mac.local
parents: 0
diff changeset
   690
								 	 "$RDI_Coords::threeBeam_2 " .
ladcp@ladcp-mac.local
parents: 0
diff changeset
   691
								 	 "$RDI_Coords::threeBeam_3 " .
ladcp@ladcp-mac.local
parents: 0
diff changeset
   692
                                 	 "$RDI_Coords::threeBeam_4\n")
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   693
	unless ($opt_4);
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   694
printf(STDERR "net rotations         : [%d]/%d/%d/[%d]\n",$prerot,$dnrot,$uprot,$postrot);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   695
printf(STDERR "rms pitch/roll        : %.1fdeg/%.1fdeg\n",$dnprrms,$upprrms);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   696
printf(STDERR "rms heave acceleration: %.2fm/s^2\n",$rms_heave_accel);
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   697
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   698
exit(0) if ($opt_Q);
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   699
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   700
#----------------------------------------------------------------------
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   701
# output profile in active ANTS format
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   702
#----------------------------------------------------------------------
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   703
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   704
print("#!/usr/bin/perl -S list\n");		
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   705
chmod(0777&~umask,*STDOUT);
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   706
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   707
print("#ANTS# [] $USAGE\n");
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   708
$uFields = "{u} {u_err} {v} {v_err} {x} {x_err} {y} {y_err}"
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   709
	if defined($opt_M);
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   710
print("#ANTS#FIELDS# {ens} {time} {elapsed} {secno} {downcast} " .
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   711
					"{w} {w_err} {err_vel} {depth} {depth_err} {seabed} " .
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   712
					"{pitch} {roll} {tilt} {hdg} {rotation} " .
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   713
					"$uFields $addFields\n");
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   714
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   715
printf("#ANTS#PARAMS# date{$dta{ENSEMBLE}[$firstgood]->{DATE}} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   716
			   "start_time{$dta{ENSEMBLE}[$firstgood]->{TIME}} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   717
			  "bottom_time{$dta{ENSEMBLE}[$atbottom]->{TIME}} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   718
				 "end_time{$dta{ENSEMBLE}[$lastgood]->{TIME}} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   719
	  "bottom_xmit_voltage{$dta{ENSEMBLE}[$atbottom]->{ADC_XMIT_VOLTAGE}} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   720
	  "bottom_xmit_current{$dta{ENSEMBLE}[$atbottom]->{ADC_XMIT_CURRENT}} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   721
		 "pinging_duration{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   722
			"cast_duration{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   723
		   "0.8_valid_bins{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   724
		  "0.8_valid_range{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   725
				"max_depth{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   726
			  "depth_error{%.1f} " .
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   727
				  "min_range{%d} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   728
				"n_ensembles{%d} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   729
                 "w_gap_time{%d} " .
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   730
				 "stderr_w{%.4f} " .
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   731
				 "rms_tilt{%.1f} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   732
		"downcast_rms_tilt{%.1f} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   733
          "upcast_rms_tilt{%.1f} " .
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   734
			 "rms_rotation{%.2f} " .
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   735
	   "deployment_rotations{%d} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   736
		 "downcast_rotations{%d} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   737
		   "upcast_rotations{%d} " .
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   738
         "recovery_rotations{%d} " .
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   739
   "rms_heave_acceleration{%.2f} " .
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   740
				"bin1_dist{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   741
			   "bin_length{%.1f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   742
					 "\n",
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   743
			($dta{ENSEMBLE}[$#{$dta{ENSEMBLE}}]->{UNIX_TIME} -
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   744
					$dta{ENSEMBLE}[0]->{UNIX_TIME}),
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   745
			$dta{ENSEMBLE}[$lastgood]->{ELAPSED_TIME},
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   746
			$gb+1,
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   747
			$dta{DISTANCE_TO_BIN1_CENTER} + $gb*$dta{BIN_LENGTH},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   748
			$dta{ENSEMBLE}[$atbottom]->{DEPTH},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   749
			$dta{ENSEMBLE}[$lastgood]->{DEPTH} -
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   750
				$dta{ENSEMBLE}[$firstgood]->{DEPTH},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   751
			$dta{DISTANCE_TO_BIN1_CENTER} +
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   752
				$min_good_bins*$dta{BIN_LENGTH},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   753
			scalar(@{$dta{ENSEMBLE}}),
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   754
			$w_gap_time,$wErr,$prrms,$dnprrms,$upprrms,$rotrms,
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   755
			$prerot,$dnrot,$uprot,$postrot,$rms_heave_accel,
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   756
			$dta{DISTANCE_TO_BIN1_CENTER},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   757
			$dta{BIN_LENGTH},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   758
	  );
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   759
printf("#ANTS#PARAMS# magnetic_declination{$opt_M} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   760
							  "uv_gap_time{%d} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   761
								   "mean_u{%.4f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   762
								 "stderr_u{%.4f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   763
									   "dx{%d} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   764
								   "dx_err{%d} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   765
								   "mean_v{%.4f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   766
								 "stderr_v{%.4f} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   767
									   "dy{%d} " .
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   768
								   "dy_err{%d}\n",
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   769
	$uv_gap_time,
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   770
	$dta{ENSEMBLE}[$lastgood]->{X} /
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   771
		$dta{ENSEMBLE}[$lastgood]->{ELAPSED_TIME},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   772
	$uErr, $dta{ENSEMBLE}[$lastgood]->{X}, $x_err,
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   773
	$dta{ENSEMBLE}[$lastgood]->{Y} /
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   774
		$dta{ENSEMBLE}[$lastgood]->{ELAPSED_TIME},
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   775
	$vErr, $dta{ENSEMBLE}[$lastgood]->{Y}, $y_err,
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   776
) if defined ($opt_M);
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   777
if ($dta{TIME_BETWEEN_PINGS} == 0) {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   778
	 print("#ANTS#PARAMS# pinging_rate{staggered}\n");
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   779
} else {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   780
	 printf("#ANTS#PARAMS# pinging_rate{%.2f}\n",
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   781
		1/$dta{TIME_BETWEEN_PINGS});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   782
}	    
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   783
if (defined($water_depth)) {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   784
	printf("#ANTS#PARAMS# water_depth{%d} sig-water_depth{%d}\n",
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   785
				$water_depth,$sig_wd);
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   786
} else {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   787
	print("#ANTS#PARAMS# water_depth{nan} sig-water_depth{nan}\n");
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   788
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   789
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   790
sub p($) { print(defined($_[0])?"$_[0] ":"nan "); }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   791
sub pb($) { print($_[0]?"1 ":"0 "); }
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   792
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   793
for ($e=$firstgood; $e<=$lastgood; $e++) {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   794
	p($dta{ENSEMBLE}[$e]->{NUMBER});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   795
	p($dta{ENSEMBLE}[$e]->{UNIX_TIME});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   796
	p($dta{ENSEMBLE}[$e]->{ELAPSED_TIME});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   797
	p($dta{ENSEMBLE}[$e]->{SECNO});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   798
	pb($dta{ENSEMBLE}[$e]->{UNIX_TIME} < $dta{ENSEMBLE}[$atbottom]->{UNIX_TIME});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   799
	p($dta{ENSEMBLE}[$e]->{W});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   800
	p($dta{ENSEMBLE}[$e]->{W_ERR});
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   801
	p($dta{ENSEMBLE}[$e]->{ERR_VEL});
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   802
	p($dta{ENSEMBLE}[$e]->{DEPTH});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   803
	p($dta{ENSEMBLE}[$e]->{DEPTH_ERR});
14
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 12
diff changeset
   804
	p($dta{ENSEMBLE}[$e]->{seabed});
18
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   805
	p(&gimbal_pitch($dta{ENSEMBLE}[$e]->{PITCH},$dta{ENSEMBLE}[$e]->{ROLL}));
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   806
	p($dta{ENSEMBLE}[$e]->{ROLL});
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 14
diff changeset
   807
	p($dta{ENSEMBLE}[$e]->{TILT});
12
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   808
	p($dta{ENSEMBLE}[$e]->{HEADING});
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   809
	p($dta{ENSEMBLE}[$e]->{ROTATION});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   810
	if (defined($opt_M)) {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   811
		p($dta{ENSEMBLE}[$e]->{U}); p($dta{ENSEMBLE}[$e]->{U_ERR});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   812
		p($dta{ENSEMBLE}[$e]->{V}); p($dta{ENSEMBLE}[$e]->{V_ERR});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   813
		p($dta{ENSEMBLE}[$e]->{X}); p($dta{ENSEMBLE}[$e]->{X_ERR});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   814
		p($dta{ENSEMBLE}[$e]->{Y}); p($dta{ENSEMBLE}[$e]->{Y_ERR});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   815
	}
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   816
	if (defined(@f)) {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   817
		foreach $f (@f) {
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   818
			my($fn,$fi) = ($f =~ m{([^[]*)(\[.*)});
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   819
			$fn = $f unless defined($fn);
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   820
			p(eval("\$dta{ENSEMBLE}[$e]->{$fn}$fi"));
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   821
		}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   822
	}
5
29faa9e6226c after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 4
diff changeset
   823
	print("\n");
0
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   824
}
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   825
229a0d72d2ab first hg version
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   826
exit(0);