README.YoYo
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     1 ======================================================================
       
     2                     R E A D M E . Y O Y O 
       
     3                     doc: Fri Aug 10 07:07:59 2012
       
     4                     dlm: Fri Oct 19 11:05:29 2012
       
     5                     (c) 2012 A.M. Thurnherr
       
     6                     uE-Info: 56 0 NIL 0 0 72 3 2 8 NIL ofnI
       
     7 ======================================================================
       
     8 
       
     9 =Overview=
       
    10 
       
    11 This README contains notes on how to process data from non-standard
       
    12 casts, such as yo-yos (consecutive down-up casts collected at a given
       
    13 location without restarting the instruments) and tow-yos (yo-yos
       
    14 carried out while vessel is in slow motion).
       
    15 
       
    16 Processing of yo-yo and tow-yo data requires the following two steps:
       
    17 	1. Split the data files into individual down-upcast pairs
       
    18 	2. Process the resulting files as described in [README.ProcessData]
       
    19 
       
    20 It is important to note that yo-yo and tow-yo casts can be full depth
       
    21 (i.e. between the sea surface and the sea bed) or partial-depth. If
       
    22 absolute velocities (rather than just vertical shear) are required for
       
    23 partial-depth casts, the user must make sure that there are either BT
       
    24 data or SADCP data available for velocity referencing of each
       
    25 down-upcast pair. Essentially this means that each down-upcast pair
       
    26 must extend down to near the seabed or up into the depth range where
       
    27 SADCP data are available. 
       
    28 
       
    29 
       
    30 =Step 1: Splitting the Data Files=
       
    31 
       
    32 Both data files must be split between individual down-upcast pairs, i.e.
       
    33 whenever the CTD winch switches from up to down.
       
    34 
       
    35 CTD DATA: First, find the CTD splitting times by plotting depth vs.
       
    36 elapsed time. Then, split the CTD data into separate files using any
       
    37 text editor. If SeaBird CNV files are use, the same header can be used
       
    38 for all output files.
       
    39 
       
    40 ADCP DATA: There is an ADCP file splitting utility for M$ Windows
       
    41 provided by RDI. Alternatively, the length of each ensemble can be read
       
    42 from the binary ADCP files and the UN*X utilities "split -b" and "cat"
       
    43 can be used to split the files into the required chunks.
       
    44 
       
    45 
       
    46 =Step 2: Processing the Split Data Files=
       
    47 
       
    48 The split data files, each containing data from exactly one consecutive
       
    49 down- and up-cast, can be processed exactly as described in
       
    50 [README.ProcessData]. If the CTD time-series data used during
       
    51 processing has an "elapsed-time" field all output elapsed times are
       
    52 consistent with this input, i.e. the elapsed times of the output casts
       
    53 are relative to the beginning of the entire yo-yo or tow-yo cast.
       
    54 Otherwise, every down-/up-cast pair gets its own elapsed-time field.
       
    55 
       
    56 Usually, in standard LADCP processing the velocity data from the down-
       
    57 and upcast are combined. While this smears out any information on the
       
    58 temporal variability of the velocity field during the cast, down- and
       
    59 upcast only profiles are necessarily derived from much fewer samples
       
    60 and, therefore, associated with considerably larger uncertainties and
       
    61 errors. It has been found, in particular, that the top-to-bottom shear
       
    62 in down-/upcast-only profiles is often quite bad. In the context of
       
    63 partial-depth yo-yo and tow-yo profiles the severity of this problem
       
    64 can be evaluated by comparing two consecutive velocity profiles at
       
    65 their "unconstrained" end. E.g., in case of a partial-depth yo-yo near
       
    66 the seabed, i.e. constrained with BT data, the uppermost portion of the
       
    67 first upcast can be compared to the uppermost portion of the 2nd
       
    68 downcast, etc. If the errors are found to be unacceptably high, the
       
    69 velocity profiles from the combined down-/upcast data should be used
       
    70 instead. Alternatively, multiple simultaneous velocity referencing
       
    71 constraints can be applied, e.g. using the shear-inversion method
       
    72 described by Thurnherr (JAOT 2010).
       
    73 
       
    74