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-======================================================================
- R E A D M E . P O S T E D I T
- doc: Wed Jun 13 20:30:10 2012
- dlm: Thu Jun 14 18:22:13 2012
- (c) 2012 A.M. Thurnherr
- uE-Info: 95 50 NIL 0 0 72 3 2 8 NIL ofnI
-======================================================================
-
-=Summary=
-
-This README explains how to post-edit the shear output from b[LADCPproc]
-before feeding it to [LADCPintsh], e.g. for removing data collected when
-the ADCP was very shallow and possibly affected by the ship's magnetic
-field.
-
-
-=Nitty-Gritty=
-
-The default output from [LADCPproc] is a so-called time-depth-series
-(.tds) file with one record per valid shear sample. Each record
-contains the following fields:
-
-ens ensemble number the shear sample is from
-elapsed elapsed time in seconds of the present ensemble
-CTD_depth depth of CTD at the time the ensemble was recorded
-downcast a boolean flag set to 1 (nan) for down(up)cast records
-depth "nominal" depth of shear sample (center depth in gridded profile)
-u_z vertical shear of zonal velocity
-v_z vertical shear of meridional velocity
-w_z vertical shear of vertical velocity
-
-This is the "general" output of [LADCPproc]. For standard processing,
-the shear is bin-averaged in depth space. While this can easily be
-accomplished, e.g. with a Matlab script, for convenience the binned
-output can be requested with the -p option of [LADCPproc]. The binned
-output cannot be post-edited!
-
-The .tds data can be post-edited. Matlab users can import these files
-with [loadANTS.m] (see [README.Output]), edit the structures, bin the
-shear in depth space, and export the new structures as ANTS files with
-[struct2ANTS.m]. For example, to remove all data collected with the
-ADCP shallower than 5m, simply delete the records for which CTD_depth
-<= 5. Or, you can bin your shear data with different statistics (e.g.
-median), instead of the arithmetic mean used by [LADCPproc] -p.
-
-Inconveniently, [LADCPintsh] at present requires its shear input to be
-in the format generated by the -p option of [LADCPproc], with the
-following fields (Matlab version):
-
-depth center depth of bin
-dc_elapsed mean elapsed time of downcast shear samples in present bin
-dc_nsamp number of downcast shear samples in bin
-dc_u_z bin-averaged downcast vertical shear of zonal velocity
-dc_u_z_sig corresponding standard deviation
-dc_v_z same for meridional velocity
-dc_v_z_sig
-dc_w_z same for vertical velocity
-dc_w_z_sig
-uc_elapsed mean elapsed time of upcast shear samples in present bin
-uc_nsamp number of upcast shear samples in bin
-uc_u_z bin-averaged upcast vertical shear of zonal velocity
-uc_u_z_sig corresponding standard deviation
-uc_v_z same for meridional velocity
-uc_v_z_sig
-uc_w_z same for vertical velocity
-uc_w_z_sig
-elapsed mean elapsed time of mean dn/upcast shear samples in present bin
-nsamp number of mean dn/upcast shear samples in bin
-u_z bin-averaged mean dn/upcast vertical shear of zonal velocity
-u_z_sig corresponding standard deviation
-v_z same for meridional velocity
-v_z_sig
-w_z same for vertical velocity
-w_z_sig
-Sv bin-averaged acoustic volume scattering coefficient
-Sv.nsamp number of samples in bin
-
-Note that the .tds file does not contain acoustic backscatter
-information, i.e. the Sv field should be set to nan and the Sv.nsamp to
-zero.
-
-After binning the shear data, Matlab users can create a structure with
-the fields listed above. Metadata (scalars in the .tds import
-structure) should be copied verbatim from the .tds import structure.
-Each of the listed fields is a vector and they must all have the same
-length. (Since the down- and upcasts do not usually cover exactly the
-same depth range, padding is almost always required.) The resulting
-structure can then be exported with [struct2ANTS.m]; the 'dependencies'
-argument should be set to the filename(s) of the .tds file(s) from
-which the binned shear profile was constructed.
-
-The only option for non-Matlab users is to create an ASCII file with
-the required columns (nan values are permitted) in the order listed
-above and prepend this with the header from the corresponding
-[LADCPproc] output file produced by the -p option.