Dec_17_2010/mergeCTD+LADCP.LADCPtimeSeries
author A.M. Thurnherr <athurnherr@yahoo.com>
Thu, 16 Apr 2015 14:50:59 +0000
changeset 27 2053d8de8d6b
parent 0 3365828b1004
permissions -rw-r--r--
updated plots & seabed code; GoM data process correctly
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     1
#======================================================================
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     2
#                    M E R G E C T D + L A D C P . L A D C P T I M E S E R I E S 
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     3
#                    doc: Sun May 23 16:40:53 2010
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     4
#                    dlm: Sat Oct 30 22:23:33 2010
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     5
#                    (c) 2010 A.M. Thurnherr
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     6
#                    uE-Info: 11 60 NIL 0 0 72 0 2 4 NIL ofnI
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     7
#======================================================================
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     8
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
     9
# HISTORY:
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    10
#	May 23, 2010: - created from [perl-tools/RDI_Utils.pl]
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    11
#	Oct 20, 2010: - disabled max_gap profile-restarting code
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    12
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    13
# NOTES:
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    14
#	- resulting DEPTH field based on integrated w without any sound speed correction
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    15
#	- single-ping ensembles assumed, i.e. no percent-good tests applied
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    16
#	- specified bin numbers are 1-relative
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    17
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    18
sub ref_lr_w($$$$)										# calc ref-layer vert vels
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    19
{
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    20
	my($dta,$ens,$rl_b0,$rl_b1) = @_;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    21
	my($i,@n,@bn,@v,@vel,@bv,@w);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    22
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    23
	for ($i=$rl_b0-1; $i<=$rl_b1-1; $i++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    24
		if (defined($dta->{ENSEMBLE}[$ens]->{W}[$i])) {							# valid w
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    25
			$vel[2] += $dta->{ENSEMBLE}[$ens]->{W}[$i]; $n[2]++;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    26
			$vel[3] += $dta->{ENSEMBLE}[$ens]->{ERRVEL}[$i], $n[3]++ if defined($dta->{ENSEMBLE}[$ens]->{ERRVEL}[$i]);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    27
			push(@w,$dta->{ENSEMBLE}[$ens]->{W}[$i]); 							# for stderr test
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    28
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    29
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    30
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    31
	my($w) = $n[2] ? $vel[2]/$n[2] : undef;				# w uncertainty
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    32
	my($sumsq) = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    33
	for ($i=0; $i<=$#w; $i++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    34
		$sumsq += ($w-$w[$i])**2;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    35
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    36
	my($stderr) = $n[2]>=2 ? sqrt($sumsq)/($n[2]-1) : undef;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    37
#	The following stderr test introduces a huge gap near the bottom of
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    38
#	the profiles. Without it, they seem more reasonable.
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    39
#	next if ($stderr > 0.05);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    40
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    41
	if (defined($w)) {									# valid w
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    42
		$dta->{ENSEMBLE}[$ens]->{REFLR_W} = $w;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    43
		$dta->{ENSEMBLE}[$ens]->{REFLR_W_ERR} = $stderr;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    44
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    45
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    46
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    47
#======================================================================
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    48
# ($firstgood,$lastgood,$atbottom,$w_gap_time) =
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    49
#	calcLADCPts($dta,$lr_b0,$lr_b1,$min_corr,$max_e,$max_gap);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    50
#======================================================================
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    51
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    52
sub calcLADCPts($$$)
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    53
{
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    54
	my($dta,$rl_b0,$rl_b1,$max_gap) = @_;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    55
	my($firstgood,$lastgood,$atbottom,$w_gap_time,$maxz);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    56
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    57
	for (my($z)=0,my($e)=0; $e<=$#{$dta->{ENSEMBLE}}; $e++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    58
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    59
		ref_lr_w($dta,$e,$rl_b0,$rl_b1);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    60
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    61
		if (defined($firstgood)) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    62
			$dta->{ENSEMBLE}[$e]->{ELAPSED_TIME} =			# time since start
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    63
				$dta->{ENSEMBLE}[$e]->{UNIX_TIME} -
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    64
				$dta->{ENSEMBLE}[$firstgood]->{UNIX_TIME};
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    65
		} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    66
			if (defined($dta->{ENSEMBLE}[$e]->{REFLR_W})) {		# start of prof.
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    67
				$firstgood = $lastgood = $e;		    
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    68
				$dta->{ENSEMBLE}[$e]->{ELAPSED_TIME} = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    69
			}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    70
			next;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    71
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    72
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    73
		#--------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    74
		# within profile: both $firstgood and $lastgood set
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    75
		#--------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    76
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    77
		if (!defined($dta->{ENSEMBLE}[$e]->{REFLR_W})) {			# gap
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    78
			$w_gap_time += $dta->{ENSEMBLE}[$e]->{UNIX_TIME} -
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    79
						   $dta->{ENSEMBLE}[$e-1]->{UNIX_TIME};
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    80
			next;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    81
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    82
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    83
		my($dt) = $dta->{ENSEMBLE}[$e]->{UNIX_TIME} -		# time step since
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    84
				  $dta->{ENSEMBLE}[$lastgood]->{UNIX_TIME}; # ... last good ens
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    85
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    86
#		if ($dt > $max_gap) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    87
#			printf(STDERR "\n\nWARNING: long gap (%ds). Profile restarted at ensemble #$dta->{ENSEMBLE}[$e]->{NUMBER}\n",$dt);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    88
#			$firstgood = $lastgood = $e;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    89
#			undef($atbottom); undef($maxz);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    90
#			$z = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    91
#			$dta->{ENSEMBLE}[$e]->{ELAPSED_TIME} = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    92
#			$w_gap_time = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    93
#			next;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    94
#		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    95
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    96
		#-----------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    97
		# The current ensemble has a valid w
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    98
		#-----------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
    99
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   100
		$z += $dta->{ENSEMBLE}[$lastgood]->{REFLR_W} * $dt;			# integrate
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   101
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   102
		$atbottom = $e, $maxz = $z if ($z > $maxz); 
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   103
		$lastgood = $e;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   104
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   105
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   106
	return ($firstgood,$lastgood,$atbottom,$w_gap_time);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   107
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   108
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   109
1;