Oct_11_2011/edit_data.pl
author A.M. Thurnherr <ant@ldeo.columbia.edu>
Wed, 09 Jul 2014 15:19:27 -0400
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#======================================================================
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#                    E D I T _ D A T A . P L 
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#                    doc: Sat May 22 21:35:55 2010
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#                    dlm: Tue Oct 11 13:48:21 2011
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#                    (c) 2010 A.M. Thurnherr
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#                    uE-Info: 173 0 NIL 0 0 72 2 2 4 NIL ofnI
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#======================================================================
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# HISTORY:
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#	May 22, 2010: - created
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#	May 24, 2010: - added editSideLobesFromSeabed()
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#	Oct 29, 2010: - added editCorr_Earthcoords
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#	Dec 20, 2010: - BUG: DISTANCE_TO_BIN1_CENTER & BIN_LENGTH had been
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#						 interpreted as along-beam, rather than vertical
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#				  - replaced editPitchRoll by editTilt
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#	Dec 25, 2010: - adapted to changes in [LADCP_w]
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#	Aug  3, 2011: - added editTruncRange()
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#	Oct 10, 2011: - added editFalsePositives()
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#				  - BUG: when earth velocities were edited, all were
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#						 counted, not just those between first and lastBin
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# NOTES:
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#	- all bins must be edited (not just the ones between $LADCP_firstBin
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#	  and $LADCP_lastBin to allow reflr calculations to use bins outside
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#	  this range
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#	- however, to make the stats work, only the edited velocities
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#	  inside the bin range are counted
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#======================================================================
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# $vv = countValidVels($ens)
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#======================================================================
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sub countValidBeamVels($)
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{
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	my($ens) = @_;
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	my($vv) = 0;
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	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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		$vv += defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][0]);
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		$vv += defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][1]);
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		$vv += defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][2]);
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		$vv += defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][3]);
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	}
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	return $vv;
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}
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#======================================================================
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# $edited = editCorr($ens,$threshold)
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#
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# NOTES:
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#	- called before Earth vels have been calculated
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#======================================================================
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sub editCorr($$)
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{
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	my($ens,$lim) = @_;
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	my($nrm) = 0;
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	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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		for (my($beam)=0; $beam<4; $beam++) {
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			next if ($LADCP{ENSEMBLE}[$ens]->{CORRELATION}[$bin][$beam] >= $lim ||
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					 !defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$beam]));
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			undef($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$beam]);
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			$nrm++;
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		}
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	}
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	return $nrm;
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}
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sub editCorr_Earthcoords($$)
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{
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	my($ens,$lim) = @_;
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	my($nrm) = 0;
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	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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		my($beam);
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		for ($beam=0; $beam<4; $beam++) {
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			last unless ($LADCP{ENSEMBLE}[$ens]->{CORRELATION}[$bin][$beam] >= $lim);
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		}
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		if ($beam < 4) {
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			for (my($c)=0; $c<4; $c++) {
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				next unless defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$c]);
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				undef($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$c]);
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				$nrm++;
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			}
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		}
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	}
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	return $nrm;
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}
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#======================================================================
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# $edited = editTilt($ens,$threshold)
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#
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# NOTES:
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#	- called before Earth vels have been calculated
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#	- sets TILT field for each ensemble as a side-effect
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#	- for consistency with editCorr() the individual velocities are counted
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#======================================================================
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sub editTilt($$)
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{
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	my($ens,$lim) = @_;
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	$LADCP{ENSEMBLE}[$ens]->{TILT} =
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		&angle_from_vertical($LADCP{ENSEMBLE}[$ens]->{PITCH},$LADCP{ENSEMBLE}[$ens]->{ROLL});
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	return 0 if ($LADCP{ENSEMBLE}[$ens]->{TILT} <= $lim);
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	my($nrm) = 0;
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	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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		for (my($beam)=0; $beam<4; $beam++) {
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			next unless defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$beam]);
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			undef($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$beam]);
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			$nrm++;
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		}
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	}
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	return $nrm;
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}
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#======================================================================
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# $edited = editErrVel($ens,$threshold)
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#
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# NOTES:
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#	- call after Earth vels have been calculated
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#	- count only edited vels in selected bin range
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#======================================================================
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sub editErrVel($$)
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{
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	my($ens,$lim) = @_;
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	my($nrm) = 0;
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	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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		next if (abs($LADCP{ENSEMBLE}[$ens]->{ERRVEL}[$bin]) <= $lim);
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		undef($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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		$nrm++ if ($bin>=$LADCP_firstBin-1 && $bin<=$LADCP_lastBin-1);
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	}
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	return $nrm;
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}
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#======================================================================
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# $edited = editTruncRange($ens,$nbins)
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#
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# NOTES:
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#	- call after Earth vels have been calculated
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#======================================================================
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sub editTruncRange($$)
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{
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	my($ens,$nbins) = @_;
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	my($nrm) = 0;
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	for (my($bin)=$LADCP{N_BINS}-1; $bin>=0 && $nrm<$nbins; $bin--) {
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		next unless defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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		undef($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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		$nrm++ if ($bin>=$LADCP_firstBin-1 && $bin<=$LADCP_lastBin-1);
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	}
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	return $nrm;
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}
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#======================================================================
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# $edited = editFalsePositives($ens,$nbins)
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#
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# NOTES:
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#	- call after Earth vels have been calculated
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#	- "false positives" are filtered in 2 stages:
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#		1) invalidate any valid velocity bracketed by invalid ones
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#		2) invalidate any remaining valid velocity following gap of
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#		   length >= $FP_BAD_GAP; initial gap is not counted as such
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#======================================================================
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my($FP_BAD_GAP) = 3;
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sub editFalsePositives($)
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{
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	my($ens) = @_;
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	my($nrm) = 0;
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	for (my($bin)=1; $bin<$LADCP{N_BINS}; $bin++) {
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		next if defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin-1])
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			 || !defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin])
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			 || defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin+1]);
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		undef($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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		$nrm++ if ($bin>=$LADCP_firstBin-1 && $bin<=$LADCP_lastBin-1);
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	}
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	my($s) = 9;  														# FINITE STATE MACHINE
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	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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		if ($s == 9) {													# skip initial gap
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			$s = 0 if defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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		} elsif ($s == $FP_BAD_GAP) {									# gap too long => delete
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			next unless defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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			undef($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
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			$nrm++ if ($bin>=$LADCP_firstBin-1 && $bin<=$LADCP_lastBin-1);
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        } else {														# short-enough gap
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			$s = defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin]) ? 0 : $s+1;
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		}
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    }
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	return $nrm;
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}
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#======================================================================
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# ($nvrm,$nerm) = editSideLobes($fromEns,$toEns,$range)
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#
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# NOTES:
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#	1) When this code is executed the sound speed is known. No attempt is made to correct for
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#	   along-beam soundspeed variation, but the soundspeed at the transducer is accounted for.
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#======================================================================
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sub editSideLobes($$$)
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{
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	my($fe,$te,$wd) = @_;	# first & last ens to process, water depth for downlooker
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	my($nvrm) = 0;			# of velocities removed
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	my($nerm) = 0;			# of ensembles affected
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	for (my($e)=$fe; $e<=$te; $e++) {
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		next unless numberp($LADCP{ENSEMBLE}[$e]->{CTD_DEPTH});
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		my($range) = $LADCP{ENSEMBLE}[$e]->{XDUCER_FACING_UP}
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				   ? $LADCP{ENSEMBLE}[$e]->{CTD_DEPTH}
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				   : $wd - $LADCP{ENSEMBLE}[$e]->{CTD_DEPTH};
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		my($sscorr) = $CTD{SVEL}[$LADCP{ENSEMBLE}[$e]->{CTD_SCAN}] / 1500;
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		my($goodBins) =   ($range - $sscorr*$LADCP{DISTANCE_TO_BIN1_CENTER})
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						/ ($sscorr*$LADCP{BIN_LENGTH})
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						- 1.5;
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		my($dirty) = 0;
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		for (my($bin)=int($goodBins); $bin<$LADCP{N_BINS}; $bin++) { 	# NB: 2 good bins implies that bin 2 is bad
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			next unless ($bin>=0 && defined($LADCP{ENSEMBLE}[$e]->{W}[$bin]));
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			$dirty = 1;
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			$nvrm++;
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			undef($LADCP{ENSEMBLE}[$e]->{W}[$bin]);
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		}
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		$nerm += $dirty;
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	}
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	return ($nvrm,$nerm);
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}
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1;