Documentation/README.ProcessingTips
author A.M. Thurnherr <athurnherr@yahoo.com>
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                    R E A D M E . P R O C E S S I N G T I P S 
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                    doc: Thu Oct 20 14:11:49 2011
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                    dlm: Fri Oct 21 17:33:21 2011
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                    (c) 2011 A.M. Thurnherr
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                    uE-Info: 18 0 NIL 0 0 72 3 2 4 NIL ofnI
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=Time Lagging Problems=
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If the first pass (1Hz) fails, there are no diagnostic plots that can
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be inspected. Often, however, this problem is simply due to CTD
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pressure spikes, which must be removed before processing. If the CTD
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pressures are good, it becomes very useful to write the
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LADCP_timeseries ($out_LADCPtis =
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"$data_subdir/$out_basename.LADCPtis";) and compare it to the CTD time
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series (averaged to 1Hz for size), e.g. to spot obvious problems or to
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determine an initial offset guess.
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One possible reason for the first time-lagging pass to fail is that the
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beginning of the cast is not correctly recognized. In case of
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2011_IWISE (003UL, but probably also others) this is because there are
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valid velocities in bin#2 even before the LADCP enters the water. The
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problem was solved  by increasing $refLr_firstBin.
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If the 2nd pass (24Hz resolution) of time lagging fails, the diagnostic
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plots (*_TL.eps, *_TLhist.eps) should be inspected. Often, the problem
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can simply be solved by decreasing $TL_required_top_three_fraction to
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something like 0.4.
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When profiles with very little ship motion (e.g. in/near the ice) are
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processed $TL_required_top_three_fraction may have to be decreased to
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very small values (0.05 in case of some stations in NBP0901). With such
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a low value it is important that the diagnostic plots are inspected
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carefully to make sure that there are no timelagging-related issues. It
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is also advisable to plot/inspect the time-series output to make sure
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that the final lag is reasonable.
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