HISTORY
changeset 56 8f120b9f795a
parent 50 84914596c635
child 57 69e39fcb7f41
equal deleted inserted replaced
55:2d8e1139acd5 56:8f120b9f795a
     1 ======================================================================
     1 ======================================================================
     2                     H I S T O R Y 
     2                     H I S T O R Y 
     3                     doc: Mon Oct 12 16:09:24 2015
     3                     doc: Mon Oct 12 16:09:24 2015
     4                     dlm: Tue Nov 27 17:00:26 2018
     4                     dlm: Sat Jul 24 10:35:19 2021
     5                     (c) 2015 A.M. Thurnherr
     5                     (c) 2015 A.M. Thurnherr
     6                     uE-Info: 373 28 NIL 0 0 72 3 2 4 NIL ofnI
     6                     uE-Info: 327 25 NIL 0 0 72 3 2 4 NIL ofnI
     7 ======================================================================
     7 ======================================================================
     8 
     8 
     9 ----------------------------------------------------------------------
     9 ----------------------------------------------------------------------
    10 First Released Version (howto does not cover VKE parameterization)
       
    11 ----------------------------------------------------------------------
       
    12 
       
    13 V1.0:
    10 V1.0:
    14 	Oct 12, 2015:
    11 	- First Released Version (howto does not cover VKE parameterization)
    15 		- finalized HowTo V1.0 (antsLibVer V6.2, ADCP_tools V1.3)
    12 ----------------------------------------------------------------------
    16 		- uploaded to Mercurial server
    13 
       
    14 Oct 12, 2015: - finalized HowTo V1.0 (antsLibVer V6.2, ADCP_tools V1.3)
       
    15 			  - uploaded to Mercurial server
    17 
    16 
    18 ----------------------------------------------------------------------		
    17 ----------------------------------------------------------------------		
    19 First Version with Full HowTo (including VKE parameterization)
       
    20 ----------------------------------------------------------------------
       
    21 
       
    22 V1.1:
    18 V1.1:
    23 	Oct 12, 2015: V1.1beta1
    19 	- First Version with Full HowTo (including VKE parameterization)
    24 		- added [version.pl]
    20 ----------------------------------------------------------------------
    25 		- adapted to version.pl: [LADCP_w_ocean] [LADCP_w_CTD]
    21 
    26 			[LADCP_VKE] [LADCP_w_postproc]
    22 Oct 12, 2015: - V1.1beta1
    27 		- modified [LADCP_w_CTD] to allow processing ASCII CNV files with
    23 			  - added [version.pl]
    28 		  wrong number of scans in header
    24 			  - adapted to version.pl: [LADCP_w_ocean] [LADCP_w_CTD]
    29 	Nov 25-27, 2015:
    25 				  [LADCP_VKE] [LADCP_w_postproc]
    30 		- minor mods to [LADCP_w_ocean] to try to get it to work on
    26 			  - modified [LADCP_w_CTD] to allow processing ASCII CNV files with
    31 		  Windows (R. Robertson)
    27                 wrong number of scans in header
    32 	Dec 22, 2015:
    28 
    33 		- removed Plots/ Documentation/ Dec_17_2010/ Dec_24_2010/
    29 Nov 25-27, 2015:
    34 				  Dec_30_2010/ Oct_11_2011/ Jul_04_2011/ from repo
    30 			  - minor mods to [LADCP_w_ocean] to try to get it to work on
    35 		- moved PostProces.sh to Utilities/ and modified README
    31                 Windows (R. Robertson)
    36 	Jan  4, 2016:
    32 
    37 		- decreased default vertical resolution to 20m [defaults.pl] [LADCP_w_ocean]
    33 Dec 22, 2015: - removed Plots/ Documentation/ Dec_17_2010/ Dec_24_2010/
    38 		- removed beta from version [version.pl] [.hg/hgrc]
    34 						Dec_30_2010/ Oct_11_2011/ Jul_04_2011/ from repo
    39 
    35               - moved PostProces.sh to Utilities/ and modified README
    40 ----------------------------------------------------------------------
    36 
    41 First Widely Released Version (many significant improvements)
    37 Jan  4, 2016: - decreased default vertical resolution to 20m [defaults.pl] [LADCP_w_ocean]
    42 ----------------------------------------------------------------------
    38 			  - removed beta from version [version.pl] [.hg/hgrc]
    43 
    39 
       
    40 ----------------------------------------------------------------------
    44 V1.2:
    41 V1.2:
    45 	Jan  5, 2016: V1.2beta
    42 	- First Widely Released Version (many significant improvements)
    46 		- updated [version.pl]
    43 ----------------------------------------------------------------------
    47 		- added support for [ADCP_tools_lib.pl]: [version.pl] [LADCP_w_ocean]
    44 
    48 	Jan 24, 2016:
    45 Jan  5, 2016: - V1.2beta
    49 		- added QC for mean residuals
    46 			  - updated [version.pl]
    50 		- added QC for dual-head wprofs
    47               - added support for [ADCP_tools_lib.pl]: [version.pl] [LADCP_w_ocean]
    51 		- added automatic editing of bad time lagged data
    48 
    52 	Jan 25 -- Mar 8:
    49 Jan 24, 2016: - added QC for mean residuals
    53 		- many bug fixes and small improvements
    50 			  - added QC for dual-head wprofs
    54 	Mar 8, 2016:
    51               - added automatic editing of bad time lagged data
    55 		- added updated howto pdf
    52 
    56 		- updated [version.pl] with new ANTSlib prerequisite version
    53 Jan 25 -- Mar 8:
    57 		- published as V1.2beta
    54 			  - many bug fixes and small improvements
    58 
    55 
    59 	Mar 9, 2016: V1.2beta2
    56 Mar  8, 2016: - added updated howto pdf
    60 		- added hab field to .wprof output [LADCP_w_ocean]
    57 			  - updated [version.pl] with new ANTSlib prerequisite version
    61 	Mar 10, 2016:
    58               - published as V1.2beta
    62 		- published
    59 
    63 
    60 Mar  9, 2016: - V1.2beta2
    64 	Mar 13, 2016: V1.2beta3
    61 		      - added hab field to .wprof output [LADCP_w_ocean]
    65 		- updated [version.pl] [.hg/hgrc]
    62 			 
    66 		- added simple ASCII CTD format [LADCP_w_CTD]
    63 Mar 10, 2016: - published
    67 		- added auto directory creation to [defaults.pl]
    64 
    68 		- updated howto
    65 Mar 13, 2016: - V1.2beta3
    69 		- published V1.2beta3
    66 			  - updated [version.pl] [.hg/hgrc]
    70 		- updated [version.pl] [.hg/hgrc] to V1.2beta4
    67 			  - added simple ASCII CTD format [LADCP_w_CTD]
    71 		- added ADCP-file checks in [LADCP_w_ocean]
    68 			  - added auto directory creation to [defaults.pl]
    72 		- updated howto
    69 			  - updated howto
    73 
    70 			  - published V1.2beta3
    74 	Mar 16, 2016: V1.2beta4
    71 			  - updated [version.pl] [.hg/hgrc] to V1.2beta4
    75 		- published on server		
    72 			  - added ADCP-file checks in [LADCP_w_ocean]
    76 		- updated [version.pl] to beta5 (gmt5)
    73               - updated howto
    77 		- adapted to GMT5
    74 
    78 
    75 Mar 16, 2016: - V1.2beta4
    79 	Mar 17, 2016: V1.2beta5
    76 			  - published on server 	  
    80 		- updated [.hg/hgrc]
    77 			  - updated [version.pl] to beta5 (gmt5)
    81 		- various plot improvements
    78               - adapted to GMT5
    82 		- updated howto
    79 
    83 		- published
    80 Mar 17, 2016: - V1.2beta5
    84 		- V1.2beta6 [version.pl] [.hg/hgrc]
    81 			  - updated [.hg/hgrc]
    85 		- changed surface-wave stat in [LADCP_w_ocean]
    82 			  - various plot improvements
    86 
    83 			  - updated howto
    87 	Mar 18-29, 2016: V1.2beta6
    84 			  - published
    88 		- [LADCP_VKE]:
    85 			  - V1.2beta6 [version.pl] [.hg/hgrc]
    89 			- added -k to supply external eps
    86               - changed surface-wave stat in [LADCP_w_ocean]
    90 			- re-designed QC checks (slope estimates)
    87 
    91 			- several other minor improvements
    88 Mar 18-29, 2016: V1.2beta6
    92 			- [LADCP_wspec]:
    89 			  - [LADCP_VKE]:
    93 				- added median # of samples to output
    90 				  - added -k to supply external eps
    94 		- [LADCP_w_CTD]:
    91 				  - re-designed QC checks (slope estimates)
    95 			- added support for $ENV{VERB}
    92 				  - several other minor improvements
    96 		- [LADCP_w_ocean]
    93 				  - [LADCP_wspec]:
    97 			- added -r)ms residual filter with 4cm/s default cutoff
    94 					  - added median # of samples to output
    98 			- fixed a couple of minor bugs (Sv correction had been disabled)
    95 			  - [LADCP_w_CTD]:
    99 			- replaced CTD w with CTD acceleration in wprof plots
    96 				  - added support for $ENV{VERB}
   100 	Mar 29, 2016: V1.2beta6
    97 			  - [LADCP_w_ocean]
   101 		- update antsMinLib to 6.6, perl-tools to 1.5 [version.pl]
    98 				  - added -r)ms residual filter with 4cm/s default cutoff
   102 		- updated howto
    99 				  - fixed a couple of minor bugs (Sv correction had been disabled)
   103 		- exported [default_paths.pl] from [defaults.pl]
   100                   - replaced CTD w with CTD acceleration in wprof plots
   104 
   101 
   105 
   102 Mar 29, 2016: - V1.2beta6
   106 	Mar 30, 2016: V1.2beta7
   103 			  - update antsMinLib to 6.6, perl-tools to 1.5 [version.pl]
   107 		- updated [version.pl] [.hg/hgrc]
   104 			  - updated howto
   108  		- [LADCP_w_CTD]: added station as optional 3rd header field in
   105               - exported [default_paths.pl] from [defaults.pl]
   109 		   				 ASCII format
   106 
   110 	Mar 31, 2016:
   107 Mar 30, 2016: - V1.2beta7
   111 		- improved version %PARAMs in all utilities
   108 			  - updated [version.pl] [.hg/hgrc]
   112 		- [LADCP_VKE]
   109 			  - [LADCP_w_CTD]: added station as optional 3rd header field in
   113 			- added averaging of spectra (inc. setting PARAMs)
   110                                ASCII format
   114 			- improved %PARAMs (also in [LADCP_wspec])
   111 
   115 			- fixed slight bug in [LADCP_wspec]
   112 Mar 31, 2016: - improved version %PARAMs in all utilities
   116 			- removed code to generate different output names on -d/-u
   113 			  - [LADCP_VKE]
   117 			- added -q
   114 				  - added averaging of spectra (inc. setting PARAMs)
   118 
   115 				  - improved %PARAMs (also in [LADCP_wspec])
   119 	Apr 3, 2016:
   116 				  - fixed slight bug in [LADCP_wspec]
   120 		- reduced low-p0 cutoff from 1e-7 to 5e-8 in [LADCP_VKE]
   117 				  - removed code to generate different output names on -d/-u
   121 		- similarly reduced equatorial band from 5 to 3 degrees
   118                   - added -q
   122 
   119 
   123 	Apr  6, 2016:
   120 Apr  3, 2016: - reduced low-p0 cutoff from 1e-7 to 5e-8 in [LADCP_VKE]
   124 		- fixed GMT-5 related bug in [LADCP_w_ocean]
   121               - similarly reduced equatorial band from 5 to 3 degrees
   125 		- increased calibration constant by 20% in [LADCP_VKE]
   122 
   126 		- updated howto
   123 Apr  6, 2016: - fixed GMT-5 related bug in [LADCP_w_ocean]
   127 		- published V1.2beta7
   124 			  - increased calibration constant by 20% in [LADCP_VKE]
   128 
   125 			  - updated howto
   129 	Apr 14, 2016: V1.2beta8
   126               - published V1.2beta7
   130 		- [LADCP_w_postproc] improved warning messages
   127 
   131 
   128 Apr 14, 2016: - V1.2beta8
   132 	Apr 16, 2016:
   129 			  - [LADCP_w_postproc] improved warning messages
   133 		- [LADCP_VKE] allow for nans in LADCP_wspec output
   130 
   134 		- updated [version.pl]
   131 Apr 16, 2016: - [LADCP_VKE] allow for nans in LADCP_wspec output
   135 
   132               - updated [version.pl]
   136 	May 12, 2016:
   133 
   137 		- updated version to 1.2
   134 May 12, 2016: - updated version to 1.2
   138 		- updated HowTo
   135 			  - updated HowTo
   139 		- published
   136               - published
   140 
   137 
   141 ----------------------------------------------------------------------		
   138 ----------------------------------------------------------------------		
   142 Adding Corrections For Beam-Pointing Errors
       
   143 ----------------------------------------------------------------------
       
   144 
       
   145 V1.3:
   139 V1.3:
   146 	May 12, 2016:
   140 	- Adding Corrections For Beam-Pointing Errors
   147 		- updated [version.pl]
   141 ----------------------------------------------------------------------
   148 		- [LADCP_w_ocean] added fields to wsamp output
   142 
   149 
   143 May 12, 2016: - updated [version.pl]
   150 	May 17-18, 2015:
   144 			  - [LADCP_w_ocean] added fields to wsamp output
   151 		- [LADCP_w_ocean] added fields to wsamp output
   145 
   152 		- modified _wprof fig (mean instead of rms tilts)
   146 May 17, 2015:
   153 		- minor mods elsewhere (e.g. version info in all plots)
   147 May 18, 2015: - [LADCP_w_ocean] added fields to wsamp output
   154 		- added new plots [defaults.pl] requiring mods to [LADCP_w_ocean]:
   148 			  - modified _wprof fig (mean instead of rms tilts)
   155 			- [plot_acceleration_residuals.pl]
   149 			  - minor mods elsewhere (e.g. version info in all plots)
   156 			- [plot_attitude_biases_w.pl]
   150 			  - added new plots [defaults.pl] requiring mods to [LADCP_w_ocean]:
   157 			- [plot_attitude_residuals.pl]
   151 				  - [plot_acceleration_residuals.pl]
   158 			- [plot_residual_profs.pl]
   152 				  - [plot_attitude_biases_w.pl]
   159 		- removed assumption of 1500m/s ADCP soundspeed setting (various files)
   153 				  - [plot_attitude_residuals.pl]
   160 		- added correct w12, w34 for earth velocity data
   154 				  - [plot_residual_profs.pl]
   161 
   155 			  - removed assumption of 1500m/s ADCP soundspeed setting (various files)
   162 	May 19, 2016:
   156               - added correct w12, w34 for earth velocity data
   163 		- updated to ADCP_tools V1.6 (coord trans interface change)
   157 
   164 
   158 May 19, 2016: - updated to ADCP_tools V1.6 (coord trans interface change)
   165 	May 24: 2016:
   159 
   166 		- implemented bin-depth caching
   160 May 24: 2016: - implemented bin-depth caching
   167 		- improved LADCP_w_postproc plot
   161 			  - improved LADCP_w_postproc plot
   168 		- improved various plots (esp. for partial-depth casts)
   162               - improved various plots (esp. for partial-depth casts)
   169 
   163 
   170 	May 25, 2016:
   164 May 25, 2016: - updated version to V1.3beta1 [version.pl] [.hg/hgrc]
   171 		- updated version to V1.3beta1 [version.pl] [.hg/hgrc]
   165 		  	  - published
   172 		- published
   166 
   173 
   167 May 26, 2016: - V1.3beta2
   174 	May 26, 2016: V1.3beta2
   168 			  - updated version to V1.3beta2 [version.pl] [.hg/hgrc]
   175 		- updated version to V1.3beta2 [version.pl] [.hg/hgrc]
   169 			  - udated ANTS_tools lib to V1.7 (beam interpolation)
   176 		- udated ANTS_tools lib to V1.7 (beam interpolation)
   170 			  - adapted [LADCP_w_ocean] to beam interpolation
   177 		- adapted [LADCP_w_ocean] to beam interpolation
   171 			  - minor improvement to [LADCP_w_postproc]
   178 		- minor improvement to [LADCP_w_postproc]
   172               - improved [plot_wprof.pl]
   179 		- improved [plot_wprof.pl]
   173 
   180 
   174 Jun  1, 2016: - improvements to [LADCP_w_ocean]
   181 	Jun  1, 2016
   175 			  - added [default_output.pl]
   182 		- improvements to [LADCP_w_ocean]
   176               - added [plot_residuals12.pl] [plot_residuals34.pl]
   183 		- added [default_output.pl]
   177 
   184 		- added [plot_residuals12.pl] [plot_residuals34.pl]
   178 Jun  2, 2016: - minor improvement and bug fix in [LADCP_w_ocean]
   185 
   179 
   186 	Jun  2, 2016:
   180 Jun  3, 2016: - minor bug fix in [LADCP_w_ocean]
   187 		- minor improvement and bug fix in [LADCP_w_ocean]
   181 
   188 
   182 Jun  6, 2016: - minor improvement in [LADCP_w_ocean] [defaults.pl] [edit_data.pl]
   189 	Jun  3, 2016:
   183 
   190 		- minor bug fix in [LADCP_w_ocean]
   184 Jun  8, 2016: - removed plot_attitude_biases_w.pl
   191 
   185               - slight improvement to [plot_attitude_residuals.pl]
   192 	Jun  6, 2016:
   186 
   193 		- minor improvement in [LADCP_w_ocean] [defaults.pl] [edit_data.pl]
   187 Jun 11, 2016: - began debugging w12 & w34 for Earth-coord data [LADCP_w_ocean]
   194 
   188 
   195 	Jun  8, 2016:
   189 Jul  7, 2016: - major BUG in [LADCP_w_ocean] (beam-pair velocities for Earth
   196 		- removed plot_attitude_biases_w.pl
   190 				  coord data)
   197 		- slight improvement to [plot_attitude_residuals.pl]
   191 
   198 
   192 Jul 12, 2016: - docu in [defaults.pl] 	  
   199 	Jun 11, 2016:
   193 
   200 		- began debugging w12 & w34 for Earth-coord data [LADCP_w_ocean]
   194 Jul 29, 2016: - minor plotting bug in [LADCP_w_CTD]
   201 
   195 
   202 	Jul  7, 2016:
   196 Jul 31, 2016: - minor bug in [LADCP_w_ocean] [defaults.pl]		  
   203 		- major BUG in [LADCP_w_ocean] (beam-pair velocities for Earth
   197 
   204 		  coord data)
   198 Aug  5, 2016: - committed version found on whoosher after repair
   205 
   199 			  - manually uploaded from ECOGIG cruise laptop:
   206 	Jul 12, 2016:
   200 				  - [LADCP_w_ocean]   changes since Jun 11, 2016
   207 		- docu in [defaults.pl]		  
   201 				  - [defaults.pl]	  changes since Jun  2, 2016
   208 
   202 				  - [LADCP_w_CTD]	  changes since May 26, 2016
   209 	Jul 29, 2016:
   203 			  - updated [version.pl] to require ANTSlib V6.7
   210 		- minor plotting bug in [LADCP_w_CTD]
   204               - updated HISTORY
   211 
   205 
   212 	Jul 31, 2016:
   206 Aug 16, 2016: - [LADCP_VKE] increased -l default 1.2e-7 based on UK2.5 SR1
   213 		- minor bug in [LADCP_w_ocean] [defaults.pl]		  
   207 				  repeat section
   214 
   208 
   215 	Aug  5, 2016:
   209 Dec 22, 2016: - [LADCP_w_ocean] moved $opt_p to [defaults.pl] 				  
   216 		- committed version found on whoosher after repair
   210 
   217 		- manually uploaded from ECOGIG cruise laptop:
   211 Dec 23, 2016: - [LADCP_w_ocean] minor bug
   218 			- [LADCP_w_ocean] 	changes since Jun 11, 2016
   212 
   219 			- [defaults.pl]		changes since Jun  2, 2016
   213 Sep  1, 2016: - [LADCP_VKE] changed -l to mean epsilon, and increased value to 1e-10
   220 			- [LADCP_w_CTD]		changes since May 26, 2016
   214 
   221         - updated [version.pl] to require ANTSlib V6.7
   215 Mar  6, 2017: - [LADCP_w_ocean] minor bug
   222         - updated HISTORY
   216               - [time_lag.pl] minor bug
   223 
   217 
   224 	Aug 16, 2016:
   218 Mar  7, 2017: - added time lines to [plot_time_lags.pl]
   225 		- [LADCP_VKE] increased -l default 1.2e-7 based on UK2.5 SR1
   219 
   226 		  			  repeat section
   220 Mar  9, 2017: - tightened timelag editing condition in [time_lag.pl]
   227 
   221               - updated [HISTORY]
   228 	Dec 22, 2016:
   222 
   229 		- [LADCP_w_ocean] moved $opt_p to [defaults.pl]		  			  
   223 Mar 12, 2017: - adapted to antslib V6.8 [version.pl]
   230 
   224 			  - adapted ADCP_tools to V1.9
   231 	Dec 23, 2016:
   225 			  - increased -o default from 20 to 40m
   232 		- [LADCP_w_ocean] minor bug
   226               - updated to V1.3
   233 
   227 
   234 	Sep  1, 2016:
   228 Mar 15, 2017: - added [loadANTS.pl] for V1.3
   235 		- [LADCP_VKE] changed -l to mean epsilon, and increased value to
   229               - updated howto
   236 					  1e-10
   230 
   237 
   231 Mar 16, 2017: - published
   238 	Mar  6, 2017:
   232 
   239 		- [LADCP_w_ocean] minor bug
   233 ----------------------------------------------------------------------
   240 		- [time_lag.pl] minor bug
   234 V 1.4
   241 
   235 ----------------------------------------------------------------------
   242 	Mar  7, 2017:
   236 
   243 		- added time lines to [plot_time_lags.pl]
   237 Oct  3, 2017: - added -q option to LADCP_w_CTD for reprocessing as 1Hz files
   244 
   238 
   245 	Mar  9, 2017:
   239 Oct 12, 2017: - re-wrote code in [LADCP_w_ocean] to deal with earth coordinates
   246 		- tightened timelag editing condition in [time_lag.pl]
   240 		   	    (MAJOR BUG FIX)
   247 		- updated [HISTORY]
   241 
   248 
   242 Oct 13, 2017: - bugfix in [edit_data.pl]
   249 	Mar 12, 2017:
   243 
   250 		- adapted to antslib V6.8 [version.pl]
   244 Oct 17, 2017: - improvements and bugfix in [LADCP_VKE]
   251 		- adapted ADCP_tools to V1.9
   245 
   252 		- increased -o default from 20 to 40m
   246 Nov 26, 2017: - significant bug fixes in [LADCP_w_ocean] related to
   253 		- updated to V1.3
   247 				  - ping-coherent residual removal
   254 
   248                   - bad beam
   255 	Mar 15, 2017:
   249 
   256 		- added [loadANTS.pl] for V1.3
   250 Nov 27, 2017: - improved gap heuristics in [time_series.pl]
   257 		- updated howto
   251               - added @valid_ensmeble_range [defaults.pl]
   258 
   252 
   259 	Mar 16, 2017:
   253 Nov 28, 2017: - increased version to V1.4 [version.pl] [.hg/hgrc]
   260 		- published
   254 			  - worked on updating howto
   261 
   255 			  - improvements to [LADCP_w_ocean]
   262 ----------------------------------------------------------------------		
   256               - removed wcorr plot from [LADCP_w_postproc]
   263 
   257 
   264 	Oct 3, 2017:
   258 Nov 29, 2017: - replaced opt_i by initial_time_lag in [defaults.pl]
   265 		- added -q option to LADCP_w_CTD for reprocessing as 1Hz files
   259 
   266 
   260 Dec  9, 2017: - removed common options from [LADCP_w_ocean] [LADCP_w_postproc]
   267 	Oct 12, 2017:
   261                 [LADCP_wspec] [LADCP_w_CTD] [LADCP_VKE]
   268 		- re-wrote code in [LADCP_w_ocean] to deal with earth coordinates
   262 
   269 		  (MAJOR BUG FIX)
   263 Dec 14, 2017: - improvements to [LADCP_wspec]
   270 
   264 
   271 	Oct 13, 2017:
   265 Dec 17, 2017: - added dependencies to [LADCP_w_ocean] [LADCP_w_CTD]
   272 		- bugfix in [edit_data.pl]
   266 
   273 
   267 Mar  8, 2018: - improvements to [LADCP_w_CTD]
   274 	Oct 17, 2017:
   268 
   275 		- improvements and bugfix in [LADCP_VKE]
   269 Mar  9, 2018: - improvements to [LADCP_w_CTD]
   276 
   270 
   277 	Nov 26, 2017:
   271 Mar 20, 2018: - added blue background color for in-ice profiles in [plot_wprof.pl]
   278 		- significant bug fixes in [LADCP_w_ocean] related to
   272               - fixed acceleration unit error in [plot_wprof.pl]
   279 			- ping-coherent residual removal
   273 
   280 			- bad beam
   274 Mar 22, 2018: - adapted howto
   281 
   275 			  - massively improved time-lagging heuristic [time_lag.pl]
   282 	Nov 27, 2017:
   276               - improved [plot_time_lags.pl]
   283 		- improved gap heuristics in [time_series.pl]
   277 
   284 		- added @valid_ensmeble_range [defaults.pl]
   278 Mar 27, 2018: - bugfix to new time lagging heuristic in [time_lag.pl]
   285 
   279 
   286 	Nov 28, 2017:
   280 Apr 24, 2018: - improvements to [LADCP_w_ocean] [LADCP_VKE] [defaults.pl]
   287 		- increased version to V1.4 [version.pl] [.hg/hgrc]
   281 
   288 		- worked on updating howto
   282 Apr 25, 2018: - improvement to [LADCP_VKE]
   289 		- improvements to [LADCP_w_ocean]
   283 
   290 		- removed wcorr plot from [LADCP_w_postproc]
   284 May  1, 2018: - added reflr_u filter in [LADCP_w_ocean] [edit_data.pl] [time_series.pl]
   291 
   285               - added ambiguity velocity check in [LADCP_w_ocean]
   292 	Nov 29, 2017:
   286 
   293 		- replaced opt_i by initial_time_lag in [defaults.pl]
   287 May  2, 2018: - bug fixes in [LADCP_w_ocean], related to
   294 
   288 				  - reflr threshold
   295 	Dec  9, 2017:		
   289 				  - PPI
   296 		- removed common options from [LADCP_w_ocean] [LADCP_w_postproc]
   290               - adapted [defaults.pl] to reflr_u filter
   297 		  [LADCP_wspec] [LADCP_w_CTD] [LADCP_VKE]
   291 
   298 
   292 May 13, 2018: - fixed bug in [LADCP_wspec]
   299 	Dec 14, 2017:		
   293 
   300 		- improvements to [LADCP_wspec]
   294 May 16, 2018: - improvement to [LADCP_wspec]
   301 
   295 
   302 	Dec 17, 2017:
   296 May 22, 2018: - improvement to [LADCP_w_CTD]
   303 		- added dependencies to [LADCP_w_ocean] [LADCP_w_CTD]
   297 
   304 
   298 Jul 24, 2018: - improvement to [LADCP_w_CTD]
   305 	Mar  8, 2018:
   299 
   306 		- improvements to [LADCP_w_CTD]
   300 Sep 13, 2018: - added '.' to library path in [version.pl]
   307 
   301 
   308 	Mar  9, 2018:
   302 Oct  4, 2018: - improvements to [LADCP_w_CTD]
   309 		- improvements to [LADCP_w_CTD]
   303 
   310 
   304 Oct  5, 2018: - improvements and bugfix in [LADCP_w_CTD]
   311 	Mar 20, 2018:
   305 
   312 		- added blue background color for in-ice profiles in [plot_wprof.pl]
   306 Oct 31, 2018: - improvements to [LADCP_w_postproc]
   313 		- fixed acceleration unit error in [plot_wprof.pl]
   307 
   314 
   308 Nov  1, 2018: - improvements to [LADCP_w_postproc]
   315 	Mar 22, 2018:
   309 
   316 		- adapted howto
   310 Nov  2, 2018: - 2-beam residuals bug fix in [LADCP_w_ocean]
   317 		- massively improved time-lagging heuristic [time_lag.pl]
   311 
   318 		- improved [plot_time_lags.pl]
   312 Nov 17, 2018: - updated [HISTORY]
   319 
   313 			  - updated prerequisites in [version.pl]
   320 	Mar 27, 2018:
   314 			  - updated [LADCP_w_howto.pdf]
   321 		- bugfix to new time lagging heuristic in [time_lag.pl]
   315 			  - updated [.hg/hgrc]
   322 
   316               - published V1.4
   323 	Apr 24, 2018:
   317 
   324 		- improvements to [LADCP_w_ocean] [LADCP_VKE] [defaults.pl]
   318 ----------------------------------------------------------------------
   325 
   319 V2.0
   326 	Apr 25, 2018:
   320 	- lots of bug fixes 
   327 		- improvement to [LADCP_VKE]
   321 	- major new features:
   328 
   322 		- dropped CTD scans handled correctly (no more apparent clock drifts)
   329 	May  1, 2018:
   323 		- support for data files collected with Nortek Signature instruments
   330 		- added reflr_u filter in [LADCP_w_ocean] [edit_data.pl] [time_series.pl]
   324 		- much improved data editing 
   331 		- added ambiguity velocity check in [LADCP_w_ocean]
   325 	- significant changes:
   332 
   326 		- no minimum limit for eps_VKE
   333 	May  2, 2018:
   327 		- updated for GMT6
   334 	 	- bug fixes in [LADCP_w_ocean], related to
   328 		- much better data quality information in summary plots
   335 	 		- reflr threshold
   329 ----------------------------------------------------------------------
   336 	 		- PPI
   330 
   337 	 	- adapted [defaults.pl] to reflr_u filter
   331 Mar 25, 2019: - [LADCP_w_CTD] changed error message to allow creating 1Hz from 4Hz file (SBE19)
   338 
   332               - [LADCP_w_CTD] BUG: ITS was not set. How is this possible?????
   339 	May 13, 2018:
   333 
   340 		- fixed bug in [LADCP_wspec]
   334 Apr 12, 2019: - [LADCP_w_ocean] added logfile error message for non-existing file
   341 
   335 
   342 	May 16, 2018:
   336 Apr 18, 2019: - [LADCP_w_ocean] added addtional RDI coordinate transformation %PARAMs
   343 		- improvement to [LADCP_wspec]
   337 
   344 
   338 Apr 21, 2019: - [LADCP_w_CTD] modified code to allow production of 24Hz files (previous code required
   345 	May 22, 2018:
   339 							  min 2 samples per bin, allowing for max 12Hz sampling rate)
   346 		- improvement to [LADCP_w_CTD]
   340               - [LADCP_w_ocean] BUG: removed duplicate warning about lacking water-depth info
   347 
   341 
   348 	Jul 24, 2018:
   342 Aug 27, 2019: - [LADCP_w_CTD] began adding correction for dropped CTD scans
   349 		- improvement to [LADCP_w_CTD]
   343 
   350 
   344 Aug 28, 2019: - [LADCP_w_CTD] made it work
   351 	Sep 13, 2018:
   345 			  - [LADCP_w_CTD] added -g
   352 		- added '.' to library path in [version.pl]
   346 
   353 
   347 Aug 30, 2019: - [LADCP_w_CTD] renamed -g to -m)odulo error correction (not)
   354 	Oct  4, 2018:
   348 			  - [LADCP_w_CTD] added -f)ill missing data
   355 		- improvements to [LADCP_w_CTD]
   349 
   356 
   350 Sep 10, 2019: - [LADCP_w_ocean] BUG: -i was erroneously listed as the initial CTD time offset
   357 	Oct  5, 2018:
   351 
   358 		- improvements and bugfix in [LADCP_w_CTD]
   352 Sep 12, 2019: - [LADCP_VKE] disabled default -l cut-off (used to be 5e-11 W/kg)
   359 
   353 			  - [LADCP_w_ocean] modified .prof output layout to be consistent with [LADCP_w_postproc]
   360 	Oct 31, 2018:
   354 	
   361 		- improvements to [LADCP_w_postproc]
   355 Oct 29, 2019: - [plot_*.pl] updated psscale -B to gmt5 syntax
   362 
   356 	
   363 	Nov  1, 2018:
   357 May 15, 2020: - [LADCP_w_ocean] BUG: re-binning on -r did not work for v12 and v34
   364 		- improvements to [LADCP_w_postproc]
   358 			  - [LADCP_w_ocean] BUG: before re-binning, upcast v12 and v34 were actuall from DC data
   365 
   359 			  - [LADCP_w_ocean] BUG: all beam-pair velocity stats were contaminated by missing values
   366 	Nov  2, 2018:
   360 			  - [LADCP_w_ocean] made bin residuals per beam pair
   367 		- 2-beam residuals bug fix in [LADCP_w_ocean]
   361 			  - [default_output.pl] removed a couple of time-depth plots from level 1
   368 
   362 			  - [default_output.pl] changed semmantics so that pushing to plot adds,
   369 	Nov 17, 2018:
   363 									instead of overwwriting
   370 		- updated [HISTORY]
   364 			  - [default_output.pl] BUG: one of the plots did not repect plotting level
   371 		- updated prerequisites in [version.pl]
   365 			  - [plot_mean_residuals.pl] adapted to bin-residuals separate per beam pair
   372 		- updated [LADCP_w_howto.pdf]
   366 			  - [plot_mean_residuals.pl] added orange range
   373 		- updated [.hg/hgrc]
   367               - [plot_mean_residuals.pl] slightly relaxed green range
   374 
   368 
       
   369 May 16, 2020: - [LADCP_w_ocean] BUG: write_residual_profs() clobbered layout
       
   370 			  - [plot_wprof.pl] added residual profile data to background
       
   371 
       
   372 May 23, 2020: - [plot_wprof.pl] BUG: windows without samples made program bomb
       
   373 
       
   374 May 25, 2020: - added [write_residual_profs.pl]
       
   375 
       
   376 Jun 22, 2020: - [LADCP_w_ocean] sscorr_w renamed to remove conflict with [RDI_Coords.pl]
       
   377 
       
   378 Jun 26, 2020: - [LADCP_w_CTD] added salinity -b)ias correction
       
   379 
       
   380 Jun 29, 2020: - [svel_corrections.pl] renamed sscorr_w to remove conflict with RDI_Coords.pl
       
   381 
       
   382 Mar 17, 2021: - [LADCP_w_ocean] turned multi-ping error into warning (for Nortek files)
       
   383 
       
   384 Mar 23, 3021: - [LADCP_w_ocean] adapted to ADCP_tools V2.4 (Nortek PD0 files)
       
   385 			  - [plot_wprof.pl] BUG: instrument frequency was rounded to 100kHz
       
   386 
       
   387 Apr 29, 2021: - [LADCP_w_CTD] improved warning message
       
   388 	
       
   389 Jun 29, 2021: - [LADCP_w_CTD] improved plot labelling
       
   390 
       
   391 Jun 30, 2021: - [LADCP_w_CTD] improved plot labelling
       
   392 			  - [LADCP_w_ocean]
       
   393 					- BUG: rms instead of mean tilt was reported in fig
       
   394 			        - added pitch/roll/tilt to output profile
       
   395 			  - [default_output.pl] renamed plot_mean_residuals to plot_bin_residuals
       
   396 		  	  - [plot_bin_residuals.pl]  renamed from plot_mean_residuals.pl
       
   397 			  - [plot_wprof.pl] improved quality semaphore
       
   398 
       
   399 Jul  1, 2021: - [LADCP_w_ocean] made %PARAMs more standard
       
   400 			  - [LADCP_w_ocean] added %dc_w.mu, %uc_w.mu
       
   401 			  - [plot_bin_residuals.pl] adapted to more standard %PARAMs
       
   402 			  - [plot_wprof.pl] replaced bin setup by <w> in legend
       
   403 			  - [LADCP_VKE] made %PARAMs more standard
       
   404               - [LADCP_w_postproc] made %PARAMs more standard
       
   405 			  - [LADCP_w_postproc] added -z to remove biases
       
   406 			  - [LADCP_w_postproc] added %?c_w_diff.rms to output
       
   407 			  - [LADCP_w_postproc] BUG: dc_corr returned strange rms
       
   408 			  - [acoustic_backscatter.pl] [bottom_tracking.pl]
       
   409 			    [find_seabed.pl] [plot_backscatter.pl]
       
   410 				[plot_correlation.pl] [plot_residuals12.pl]
       
   411 				[plot_residuals34.pl] [plot_wsamp.pl] [time_lag.pl] made %PARAMs more standard
       
   412 
       
   413 Jul  6, 2021: - [LADCP_w_ocean] BUG: %uc_w.mu was off by factor 2
       
   414 
       
   415 Jul  7, 2021: - [plot_wprof.pl] added colored background to <w>
       
   416               - [LADCP_w_postproc] reversed logic of -z (enables bias correction by default)
       
   417 			  - [LADCP_w_postproc] BUG: plot had label in wrong location for single-head profiles
       
   418 
       
   419 Jul  9, 2021: - [LADCP_w_ocean] added LR_RMS_BP_RESIDUAL, dc_lr_bp_res.rms, uc_lr_bp_res.rms
       
   420 			  - [LADCP_w_ocean] added residuals profile filter
       
   421 			  - [defaults.pl] - added $layer_residuals_rms_max
       
   422 			  - [plot_wprof.pl] adapted to new residual editing (calculation in LADCP_w_ocean)
       
   423               - [LADCP_w_postproc] added window correlation stats
       
   424 			  - [LADCP_w_postproc] updated %PARAM names
       
   425 			  - [edit_data.pl] added editHighResidualLayers()
       
   426 			  
       
   427 Jul 11, 2021: - [LADCP_w_ocean] added %dc_w.var, %uc_w.var
       
   428 			  - [LADCP_w_ocean] reduced warning associated with residuals profile filter
       
   429 			  - [LADCP_w_ocean] disable time-lag filtering for transmission-error corrected CTD files
       
   430 			  
       
   431 Jul 13, 2021: - [LADCP_w_ocean] set dc_w.mu, dc_w.var to nan on insufficient data
       
   432 			  - [LADCP_w_ocean] BUG: residuals profile filter bombed when no data were removed
       
   433 			  - [LADCP_w_ocean] BUG: rms BT discrepancy was broken (residuals profile filter)
       
   434 			  - [LADCP_w_ocean] BUG: *_w.var did not respect -k
       
   435 			  - [LADCP_w_CTD] improved gaps PARAMs
       
   436 			  - [LADCP_w_CTD] added clock/transmission warnings
       
   437               - [LADCP_w_postproc] BUG: dc_sig, dc_rms confusion
       
   438 			  
       
   439 Jul 23, 2021: - [LADCP_w_ocean] added %ADCP_type
       
   440 			  - [LADCP_VKE] returned to published empirical calibration constant (20% difference is not significant)
       
   441 			  - [LADCP_VKE] added calibration constant to output metadata
       
   442 			  - [LADCP_VKE] changed opt_a default from nan to 0 (ambient mixing)
       
   443 			  - [LADCP_VKE] BUG: -z default was only 1, which means that -k20 from LADCP_w_ocean applies; in
       
   444 					 practice I found with A20 that there are the effective value is >60; which means
       
   445 					 that this bug did not matter much in practice
       
   446 			  - [LADCP_VKE] changed calibration constant back, because it makes sense, and because it is now
       
   447 				recorded in the meta-data
       
   448 			  - [LADCP_w_postproc] added summary info to plot
       
   449 			  - [LADCP_w_postproc] added seabed to plot
       
   450 			  - [LADCP_w_postproc] added annotations to plot
       
   451 
       
   452 Jul 24, 2021: - [HISTORY] updated
       
   453 			  - V2.0 released			  
       
   454 				
       
   455 
       
   456