author | A.M. Thurnherr <athurnherr@yahoo.com> |
Wed, 17 Jan 2018 12:19:54 -0500 | |
changeset 20 | 61b92f8fb463 |
parent 17 | f5a63c03d9c8 |
child 22 | 624b1ed6e9c9 |
permissions | -rw-r--r-- |
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function [] = process_cast(stn,begin_step,stop,eval_expr) |
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% function [] = process_cast(stn[,begin_step[,stop[,eval_expr]]]) |
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% |
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% Process LADCP cast, including GPS, SADCP, and BT data. |
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% |
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% Before a cast is processed, [set_cast_params.m] is called --- cruise- |
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% and/or cast-specific parameters should be set there. After a cast |
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% is processed, [post_process_cast.m] is called (if it exists) --- cruise- |
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% and/or cast-specific post-processing should be carried out there. |
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% |
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% stop: 0 don't stop (default) |
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% -1 stop before begin_step |
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% 1 stop after begin_step |
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% 2 stop after all steps |
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% |
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% eval_expr is evaluated after loading the checkpoint, just before |
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% processing starts; it can be used to override variables |
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% saved in the checkpoint. |
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% |
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% LIST OF STEPS FOR begin_step: |
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% |
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% 1: LOAD LADCP DATA |
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% 2: FIX LADCP-DATA PROBLEMS |
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% 3: LOAD GPS DATA |
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% 4: GET BOTTOM-TRACK DATA |
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% 5: LOAD CTD PROFILE |
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% 6: LOAD CTD TIME SERIES |
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% 7: FIND SURFACE & SEA BED |
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% 8: APPLY PITCH/ROLL CORRECTIONS |
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% 9: EDIT DATA |
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% 10: FORM SUPER ENSEMBLES |
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% 11: REMOVE SUPER-ENSEMBLE OUTLIERS |
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% 12: RE-FORM SUPER ENSEMBLES |
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% 13: (RE-)LOAD SADCP DATA |
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% 14: CALCULATE INVERSE SOLUTION |
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% 15: CALCULATE SHEAR SOLUTION |
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% 16: PLOT RESULTS & SHOW WARNINGS |
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% 17: SAVE OUTPUT |
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%====================================================================== |
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% P R O C E S S _ C A S T . M |
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% doc: Thu Jun 24 16:54:23 2004 |
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% dlm: Wed Mar 29 12:57:24 2017 |
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% (c) 2004 A.M. Thurnherr |
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% uE-Info: 90 39 NIL 0 0 72 0 2 8 NIL ofnI |
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%====================================================================== |
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% NOTES: |
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% - changing this function should not be required, except to fix bugs |
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% - in order to preserve state variables across load/save calls in matlab, |
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% they must be fields of the pcs structure |
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% HISTORY: |
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% Jun 24, 2004: - created by combining laproc.m presolve.m resolve.m |
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% Jun 25, 2004: - IMPROVEMENTS: |
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% - save plots only if f.res defined |
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% - add processing warnings to fig. 11 |
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% Jun 27, 2004: - removed the saving of processing structures |
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% - added 0 to debug_steps |
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% Jun 28, 2004: - replaced debug_steps by stop parameter |
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% Jul 2, 2004: - merged with [do_stn.m] |
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% Jul 4, 2004: - added update_figures |
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% Jul 9, 2004: - BUG: warnings were not shown if only pwarnp was set |
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% Jul 16, 2004: - added support for fig. 14 (edit_data.m) |
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% Jul 17, 2004: - changed getinv return params |
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% Jul 18, 2004: - added eval_expr parameter |
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% Jul 19, 2004: - changed [set_cast_params.m] from function to script |
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% Jul 21, 2004: - made checkpoints user-selectable |
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% - made sure [set_cast_params.m] is executed after loading |
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% checkpoint |
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% Jul 22, 2004: - changed [post_process_cast.m] from function to script |
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% to allow access to variables from [set_cast_params.m] |
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% Jul 23, 2004: - moved all state variables to structure pcs. |
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% Nov 23, 2004: - added handle wrapper to prevent printing of empty |
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% figures, which bombs on Matlab 7 R 14 (linux) |
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% May 23, 2008: - added test after call to getdpthi() to make sure |
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% results are complete (current getdpthi does not work |
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% with CLIVAR P18 leg1 casts 46, 48, 49 & 50 |
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% Sep 18, 2008: - BUG: p.navdata was non-existent field when no nav |
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% data were loaded |
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% Apr 26, 2012: - finally removed finestructure kz code |
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% Sep 26, 2014: - added support for p.orig in [saveres.m] (patch by Dan Torres) |
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% May 12, 2015: - finally removed entire step 16 (diffusivity) |
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% Jul 27, 2016: - added explicit .mat to checkpoints file to allow more |
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% complex filenames |
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% Oct 14, 2016: - BUG: ctd_t, ctd_s were set after first pass, sometimes |
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% causing inconsistent vector lengths |
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% Mar 29, 2017: - added att and da to saveres |
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% - added saveplot_pdf |
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% - made fignums 2-digit |
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%---------------------------------------------------------------------- |
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% STEP 0: EXECUTE ALWAYS |
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%---------------------------------------------------------------------- |
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if nargin < 4, eval_expr = ''; end % by default, no variable overrides |
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if nargin < 3, stop = 0; end % by default, no debug stops |
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if nargin < 2, begin_step = 1; end % by default, start from scratch |
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pcs.begin_step = begin_step; % parameters are state variables |
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pcs.stop = stop; |
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pcs.eval_expr = eval_expr; |
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clear f d dr p ps; % blank slate |
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f.ladcpdo = ' '; % required by [m/default.m] |
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default; % load default parameters |
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p = setdefv(p,'checkpoints',[]); % disable checkpointing by default |
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if exist('set_cast_params') ~= 2 % set per-cast parameters |
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error('cannot find set_cast_params.m'); |
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else |
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114 |
set_cast_params; |
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115 |
end |
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116 |
|
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openwindows; % open all windows |
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118 |
|
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119 |
if length(f.res) > 1 % open log file |
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if exist([f.res,'.log'])==exist('loadrdi.m') |
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eval(['delete ',f.res,'.log']) |
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122 |
end |
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123 |
diary([f.res,'.log']) |
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diary on |
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125 |
end |
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126 |
|
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127 |
disp(p.software); % show version |
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128 |
|
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if length(f.checkpoints) <= 1 % setup checkpointing |
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error('Need to set f.checkpoints to write checkpoint files'); |
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131 |
end |
20 | 132 |
eval(sprintf('save %s_0.mat stn',f.checkpoints)); % sentinel |
0
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133 |
|
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last_checkpoint = pcs.begin_step - 1; % find last valid checkpoint |
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while ~exist(sprintf('%s_%d.mat',f.checkpoints,last_checkpoint),'file') |
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last_checkpoint = last_checkpoint - 1; |
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137 |
end |
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138 |
|
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pcs.target_begin_step = pcs.begin_step; % backtrack to last valid checkpoint |
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if last_checkpoint >= 0 & pcs.begin_step > last_checkpoint+1 |
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141 |
disp(sprintf('Backtracking begin_step from %d to %d',... |
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pcs.begin_step,last_checkpoint+1)); |
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pcs.begin_step = last_checkpoint + 1; |
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144 |
end |
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145 |
|
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while last_checkpoint < 100 % remove now-invalid checkpoints |
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last_checkpoint = last_checkpoint + 1; |
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if exist(sprintf('%s_%d.mat',f.checkpoints,last_checkpoint),'file') |
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delete(sprintf('%s_%d.mat',f.checkpoints,last_checkpoint)); |
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150 |
end |
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151 |
end |
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152 |
|
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153 |
tic; % start timer |
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154 |
|
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%pcs.step_name = 'INITIALIZATION'; % allow debugging of initial params |
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156 |
pcs.cur_step = 0; pcs.update_figures = []; |
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%end_processing_step; |
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158 |
|
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159 |
%---------------------------------------------------------------------- |
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160 |
% STEP 1: LOAD LADCP DATA |
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161 |
%---------------------------------------------------------------------- |
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162 |
|
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163 |
pcs.cur_step = pcs.cur_step + 1; |
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if pcs.begin_step <= pcs.cur_step |
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165 |
pcs.step_name = 'LOAD LADCP DATA'; begin_processing_step; |
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166 |
|
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167 |
% LOAD RDI BB-raw data |
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168 |
% this is a rather complex set of functions |
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169 |
% 1) load raw data |
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170 |
% apply magentic deviation if given |
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171 |
% 2) merge down-up data |
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172 |
% 3) do some fist order error checks |
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173 |
[d,p]=loadrdi(f,p); |
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174 |
|
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175 |
% get instrument serial number |
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176 |
p=getserial(f,p); |
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177 |
|
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178 |
end_processing_step; |
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179 |
end % OF STEP 1: LOAD DATA |
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180 |
|
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181 |
%---------------------------------------------------------------------- |
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182 |
% STEP 2: FIX LADCP-DATA PROBLEMS |
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183 |
%---------------------------------------------------------------------- |
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184 |
|
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185 |
pcs.cur_step = pcs.cur_step + 1; |
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186 |
if pcs.begin_step <= pcs.cur_step |
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187 |
pcs.step_name = 'FIX LADCP-DATA PROBLEMS'; begin_processing_step; |
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188 |
|
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189 |
% fix problems with switched beams on instrument |
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190 |
if existf(p,'beam_switch')==1, [d,p]=switchbeams(d,p); end |
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191 |
|
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192 |
% fix problems with a compass |
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193 |
if p.fix_compass>0, [d,p]=fixcompass(d,p); end |
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194 |
|
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195 |
end_processing_step; |
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196 |
end % OF STEP 2: FIX LADCP-DATA PROBLEMS |
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197 |
|
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198 |
%---------------------------------------------------------------------- |
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199 |
% STEP 3: LOAD GPS DATA |
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200 |
%---------------------------------------------------------------------- |
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201 |
|
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202 |
pcs.cur_step = pcs.cur_step + 1; |
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203 |
if pcs.begin_step <= pcs.cur_step |
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204 |
pcs.step_name = 'LOAD GPS DATA'; begin_processing_step; |
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205 |
|
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206 |
p.navdata = 0; |
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207 |
if length(f.nav)>1 & exist('loadnav')==exist('loadrdi') |
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208 |
[d,p]=loadnav(f,d,p); |
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209 |
else |
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210 |
d.slon=NaN*d.time_jul; d.slat=d.slon; |
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211 |
end |
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212 |
|
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213 |
end_processing_step; |
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214 |
end % OF STEP 3: LOAD GPS DATA |
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215 |
|
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216 |
%---------------------------------------------------------------------- |
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217 |
% STEP 4: GET BOTTOM-TRACK DATA |
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218 |
%---------------------------------------------------------------------- |
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219 |
|
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pcs.cur_step = pcs.cur_step + 1; |
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if pcs.begin_step <= pcs.cur_step |
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222 |
pcs.step_name = 'GET BOTTOM-TRACK DATA'; begin_processing_step; |
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223 |
|
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224 |
% Check if hbot values are mostly ==0 |
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% |
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226 |
% some RDI instruments seem to have trouble reporting the distance of the bottom |
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% despite giving reasonable bottom track values. |
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% If this problem is diagnosed we make the distance ourselves. |
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% |
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ii1=sum(isfinite(d.hbot)); |
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ii0=sum(d.hbot==0); |
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p.hbot_0=ii0/(ii1+1)*100; |
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233 |
|
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if p.hbot_0>80 |
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p.bottomdist=1; |
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disp([' WARNING found ',int2str(p.hbot_0),'% of hbot=0 WARNING']) |
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237 |
end |
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238 |
|
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[d,p]=getbtrack(d,p); |
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240 |
|
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241 |
end_processing_step; |
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end % OF STEP 4: GET BOTTOM-TRACK DATA |
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243 |
|
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244 |
%---------------------------------------------------------------------- |
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% STEP 5: LOAD CTD PROFILE |
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246 |
%---------------------------------------------------------------------- |
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247 |
|
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pcs.cur_step = pcs.cur_step + 1; |
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if pcs.begin_step <= pcs.cur_step |
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pcs.step_name = 'LOAD CTD PROFILE'; begin_processing_step; |
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251 |
|
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% get processed ctd profile data |
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% We provide more than one version to support different file formats |
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254 |
% |
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255 |
if length(f.ctdprof)>1 & exist('loadctdprof')==exist('loadrdi') |
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[d,p]=loadctdprof(f,d,p); |
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257 |
end |
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258 |
|
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end_processing_step; |
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end % OF STEP 5: LOAD CTD PROFILE |
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261 |
|
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262 |
%---------------------------------------------------------------------- |
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% STEP 6: LOAD CTD TIME SERIES |
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264 |
%---------------------------------------------------------------------- |
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265 |
|
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pcs.cur_step = pcs.cur_step + 1; |
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267 |
if pcs.begin_step <= pcs.cur_step |
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pcs.step_name = 'LOAD CTD TIME SERIES'; begin_processing_step; |
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269 |
|
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% get ctd time series data |
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271 |
% We provide more than one version to support different file formats |
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272 |
% |
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273 |
if length(f.ctd)>1 & exist('loadctd')==exist('loadrdi') |
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274 |
pcs.update_figures = [pcs.update_figures 4]; |
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[d,p]=loadctd(f,d,p); |
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276 |
end |
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277 |
|
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278 |
end_processing_step; |
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279 |
end % OF STEP 6: LOAD CTD TIME SERIES |
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280 |
|
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281 |
%---------------------------------------------------------------------- |
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282 |
% STEP 7: FIND SURFACE & SEA BED (fig. 2) |
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283 |
%---------------------------------------------------------------------- |
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284 |
|
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285 |
pcs.cur_step = pcs.cur_step + 1; |
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286 |
if pcs.begin_step <= pcs.cur_step |
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287 |
pcs.step_name = 'FIND SURFACE & SEA BED'; begin_processing_step; |
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288 |
pcs.update_figures = [pcs.update_figures 2]; |
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289 |
|
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290 |
% Find depth and bottom and surface using ADCP data |
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291 |
if p.getdepth==2 |
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292 |
[d,p]=getdpthi(d,p); |
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293 |
if length(find(~isfinite(d.izm(1,:)))) |
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|
294 |
error('Non-finite values in d.izm --- try processing with p.getdepth == 1'); |
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295 |
end |
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296 |
else |
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297 |
[d,p]=getdpth(d,p); |
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298 |
end |
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299 |
|
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300 |
% Plot a summary plot of the raw data |
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301 |
figure(2), clf |
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302 |
p=plotraw(d,p); |
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303 |
pause(.01) |
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304 |
|
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305 |
end_processing_step; |
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306 |
end % OF STEP 7: FIND SURFACE & SEA BED |
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307 |
|
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308 |
%---------------------------------------------------------------------- |
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309 |
% STEP 8: APPLY PITCH/ROLL CORRECTIONS |
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310 |
%---------------------------------------------------------------------- |
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311 |
|
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312 |
pcs.cur_step = pcs.cur_step + 1; |
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313 |
if pcs.begin_step <= pcs.cur_step |
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314 |
pcs.step_name = 'APPLY PITCH/ROLL CORRECTIONS'; begin_processing_step; |
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315 |
|
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316 |
if length(p.tiltcor)>1 |
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317 |
pd.dpit=p.tiltcor(1); |
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318 |
pd.drol=p.tiltcor(2); |
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319 |
d=uvwrot(d,pd,1); |
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320 |
end |
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321 |
|
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322 |
if length(p.tiltcor)>2 |
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323 |
pu.dpit=p.tiltcor(3); |
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324 |
pu.drol=p.tiltcor(4); |
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325 |
d=uvwrot(d,pu,0); |
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326 |
end |
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327 |
|
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328 |
end_processing_step; |
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329 |
end % OF STEP 8: APPLY PITCH/ROLL CORRECTIONS |
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330 |
|
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|
331 |
%---------------------------------------------------------------------- |
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|
332 |
% STEP 9: EDIT DATA |
0a450563f904
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parents:
diff
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|
333 |
%---------------------------------------------------------------------- |
0a450563f904
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parents:
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|
334 |
|
0a450563f904
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parents:
diff
changeset
|
335 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
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parents:
diff
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|
336 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
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parents:
diff
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|
337 |
pcs.step_name = 'EDIT DATA'; begin_processing_step; |
0a450563f904
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parents:
diff
changeset
|
338 |
pcs.update_figures = [pcs.update_figures 14]; |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
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|
339 |
|
0a450563f904
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parents:
diff
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|
340 |
d = edit_data(d,p); |
0a450563f904
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parents:
diff
changeset
|
341 |
|
0a450563f904
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parents:
diff
changeset
|
342 |
end_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
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|
343 |
end % OF STEP 9: EDIT DATA |
0a450563f904
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parents:
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|
344 |
|
0a450563f904
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parents:
diff
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|
345 |
%---------------------------------------------------------------------- |
0a450563f904
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parents:
diff
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|
346 |
% STEP 10: FORM SUPER ENSEMBLES |
0a450563f904
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parents:
diff
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|
347 |
%---------------------------------------------------------------------- |
0a450563f904
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parents:
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|
348 |
|
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
349 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
350 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
351 |
pcs.step_name = 'FORM SUPER ENSEMBLES'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
352 |
pcs.update_figures = [pcs.update_figures 5 6 10]; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
353 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
354 |
[di,p,d]=prepinv(d,p); |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
355 |
|
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
356 |
end_processing_step; |
0a450563f904
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parents:
diff
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|
357 |
end % OF STEP 10: FORM SUPER ENSEMBLES |
0a450563f904
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parents:
diff
changeset
|
358 |
|
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
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|
359 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
360 |
% STEP 11: REMOVE SUPER-ENSEMBLE OUTLIERS |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
361 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
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parents:
diff
changeset
|
362 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
363 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
364 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
365 |
pcs.step_name = 'REMOVE SUPER-ENSEMBLE OUTLIERS'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
366 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
367 |
% Reduce scatter by successively removing 1% of the data |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
368 |
% in oder to do that we need a first solution |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
369 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
370 |
if ps.outlier>0 | p.offsetup2down>0 |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
371 |
diary off |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
372 |
if exist('loadsadcp')==exist('loadrdi') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
373 |
[di,p]=loadsadcp(f,di,p); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
374 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
375 |
dino=di; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
376 |
lanarrow |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
377 |
diary on |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
378 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
379 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
380 |
end_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
381 |
end % OF STEP 11: REMOVE SUPER-ENSEMBLE OUTLIERS |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
382 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
383 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
384 |
% STEP 12: RE-FORM SUPER ENSEMBLES |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
385 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
386 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
387 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
388 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
389 |
pcs.step_name = 'RE-FORM SUPER ENSEMBLES'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
390 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
391 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
392 |
% once we have a first guess profile we recompute the super ensemble |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
393 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
394 |
if (p.offsetup2down>0 & length(d.izu)>0) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
395 |
pcs.update_figures = [pcs.update_figures 5 6 10]; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
396 |
diary off |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
397 |
[di,p,d]=prepinv(d,p,dr); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
398 |
diary on |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
399 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
400 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
401 |
end_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
402 |
end % OF STEP 12: RE-FORM SUPER ENSEMBLES |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
403 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
404 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
405 |
% STEP 13: (RE-)LOAD SADCP DATA |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
406 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
407 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
408 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
409 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
410 |
pcs.step_name = '(RE-)LOAD SADCP DATA'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
411 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
412 |
if exist('loadsadcp')==exist('loadrdi') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
413 |
pcs.update_figures = [pcs.update_figures 9]; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
414 |
di=loadsadcp(f,di,p); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
415 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
416 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
417 |
end_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
418 |
end % OF STEP 13: (RE-)LOAD SADCP DATA |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
419 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
420 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
421 |
% STEP 14: CALCULATE INVERSE SOLUTION |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
422 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
423 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
424 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
425 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
426 |
pcs.step_name = 'CALCULATE INVERSE SOLUTION'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
427 |
pcs.update_figures = [pcs.update_figures 3 7 12 13 14]; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
428 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
429 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
430 |
% take advantage of presolve if it existed |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
431 |
% call the main inversion routine |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
432 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
433 |
[p,dr,ps,de]=getinv(di,p,ps,dr,1); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
434 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
435 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
436 |
% check inversion constraints |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
437 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
438 |
p=checkinv(dr,di,de,der,p,ps); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
439 |
if existf(de,'bvel'), p=checkbtrk(d,di,de,dr,p); end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
440 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
441 |
end_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
442 |
end % OF STEP 14: CALCULATE INVERSE SOLUTION |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
443 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
444 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
445 |
% STEP 15: CALCULATE SHEAR SOLUTION |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
446 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
447 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
448 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
449 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
450 |
pcs.step_name = 'CALCULATE SHEAR SOLUTION'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
451 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
452 |
% Compute 'old fashioned' shear based solution |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
453 |
% two choices, fisrt us all data |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
454 |
% second use super ensemble data |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
455 |
ps=setdefv(ps,'shear',1); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
456 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
457 |
if ps.shear>0 |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
458 |
if ps.shear==1 |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
459 |
[ds,dr,ps,p]=getshear2(d,p,ps,dr); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
460 |
else |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
461 |
[ds,dr,ps,p]=getshear2(di,p,ps,dr); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
462 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
463 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
464 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
465 |
end_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
466 |
end % OF STEP 15: CALCULATE SHEAR SOLUTION |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
467 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
468 |
%---------------------------------------------------------------------- |
17 | 469 |
% STEP 16: PLOT RESULTS & SHOW WARNINGS |
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
470 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
471 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
472 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
473 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
474 |
pcs.step_name = 'PLOT RESULTS & SHOW WARNINGS'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
475 |
pcs.update_figures = [pcs.update_figures 1 11]; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
476 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
477 |
% Plot final results |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
478 |
figure(1), clf |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
479 |
plotinv(dr,d,p,ps) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
480 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
481 |
% Convert p.warn to one line of text with newline characters |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
482 |
p.warnings = []; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
483 |
for i = 1:size(p.warnp,1) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
484 |
p.warnings = [p.warnings deblank(p.warnp(i,:)) char(10)]; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
485 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
486 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
487 |
figure(11) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
488 |
clf |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
489 |
% experimental diagnostic of battery voltage |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
490 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
491 |
p=battery(p); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
492 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
493 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
494 |
% complete task by repeating the most important warnings |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
495 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
496 |
if size(p.warn,1) + size(p.warnp,1) > 2 |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
497 |
disp(p.warn) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
498 |
disp(' ') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
499 |
disp(p.warnp) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
500 |
for j=1:size(p.warn,1) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
501 |
text(0,1.1-j/10,p.warn(j,:),'color','r','fontsize',14,'fontweight','bold') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
502 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
503 |
for j=1:size(p.warnp,1) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
504 |
text(0,1.1-(size(p.warn,1)+1+j)/10,p.warnp(j,:),'color','r','fontsize',14,'fontweight','bold') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
505 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
506 |
axis off |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
507 |
else |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
508 |
text(0,1.1-1/10,'LADCP profile OK','color','g','fontsize',30,'fontweight','bold') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
509 |
axis off |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
510 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
511 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
512 |
streamer([p.name,' Figure 11']); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
513 |
pause(0.01) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
514 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
515 |
end_processing_step; |
17 | 516 |
end % OF STEP 16: PLOT RESULTS & SHOW WARNINGS |
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
517 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
518 |
%---------------------------------------------------------------------- |
17 | 519 |
% STEP 17: SAVE OUTPUT |
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
520 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
521 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
522 |
pcs.cur_step = pcs.cur_step + 1; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
523 |
if pcs.begin_step <= pcs.cur_step |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
524 |
pcs.step_name = 'SAVE OUTPUT'; begin_processing_step; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
525 |
|
20 | 526 |
if existf(d,'ctdprof_p') |
527 |
dr.ctd_t=interp1q(d.ctdprof_z,d.ctdprof_t,dr.z); |
|
528 |
dr.ctd_s=interp1q(d.ctdprof_z,d.ctdprof_s,dr.z); |
|
529 |
end |
|
530 |
if existf(d,'ctdprof_ss') |
|
531 |
dr.ctd_ss=interp1q(d.ctdprof_z,d.ctdprof_ss,dr.z); |
|
532 |
end |
|
533 |
||
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
534 |
if length(f.res)>1 |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
535 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
536 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
537 |
% save results to ASCII, MATLAB and NETCD files |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
538 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
539 |
disp(' save results ') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
540 |
da=savearch(dr,d,p,ps,f,att); |
20 | 541 |
saveres(dr,p,ps,f,d,att,da) |
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
542 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
543 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
544 |
% save plots |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
545 |
% |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
546 |
disp(' save plots ') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
547 |
for i = 1:length(p.saveplot) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
548 |
j = p.saveplot(i); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
549 |
if any(ismember(j,pcs.update_figures)) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
550 |
disp(sprintf(' figure %d...',j)); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
551 |
ok = 1; eval(sprintf('h = get(%d);',j),'ok = 0;'); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
552 |
if ok |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
553 |
figure(j); |
20 | 554 |
eval(sprintf('print -dpsc %s_%02d.ps',f.res,j)) |
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
555 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
556 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
557 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
558 |
for i = 1:length(p.saveplot_png) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
559 |
j = p.saveplot_png(i); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
560 |
if any(ismember(j,pcs.update_figures)) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
561 |
ok = 1; eval(sprintf('h = get(%d);',j),'ok = 0;'); |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
562 |
if ok |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
563 |
figure(j) |
20 | 564 |
eval(sprintf('print -dpng %s_%02d.png',f.res,j)) |
565 |
end |
|
566 |
end |
|
567 |
end |
|
568 |
for i = 1:length(p.saveplot_pdf) |
|
569 |
j = p.saveplot_pdf(i); |
|
570 |
if any(ismember(j,pcs.update_figures)) |
|
571 |
ok = 1; eval(sprintf('h = get(%d);',j),'ok = 0;'); |
|
572 |
if ok |
|
573 |
figure(j) |
|
574 |
eval(sprintf('print -dpdf %s_%02d.pdf',f.res,j)) |
|
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
575 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
576 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
577 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
578 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
579 |
disp(' save protocol ') |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
580 |
% diary off |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
581 |
diary off |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
582 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
583 |
% save a protocol |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
584 |
saveprot |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
585 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
586 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
587 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
588 |
end_processing_step; |
17 | 589 |
end % OF STEP 17: SAVE OUTPUT |
0
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
590 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
591 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
592 |
% FINAL STEP: CLEAN UP |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
593 |
%---------------------------------------------------------------------- |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
594 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
595 |
if exist('post_process_cast','file') % cruise-specific post-processing |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
596 |
post_process_cast; |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
597 |
end |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
598 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
599 |
fclose('all'); % close all files just to make sure |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
600 |
|
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
601 |
disp(' ') % final message |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
602 |
disp(['==> The whole task took ',int2str(toc),' seconds']) |
0a450563f904
VIX_6: first version for Mercurial release
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff
changeset
|
603 |