LADCPproc
author A.M. Thurnherr <athurnherr@yahoo.com>
Wed, 16 May 2012 18:56:20 +0000
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permissions -rwxr-xr-x
V1.0beta3
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#!/usr/bin/perl
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#======================================================================
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#                    L A D C P P R O C 
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#                    doc: Thu Sep 16 20:36:10 2010
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#                    dlm: Wed May 16 18:44:45 2012
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#                    (c) 2010 A.M. Thurnherr
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#                    uE-Info: 73 0 NIL 0 0 72 10 2 4 NIL ofnI
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#======================================================================
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$antsSummary = 'process LADCP data to get shear, time series';
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# NOTES:
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#   - the shear-method editing in this code is based on Eric Firing's merge.c
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#   - as described in [LADCPproc.backscatter], there are three different codes 
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#     for correcting echo amplitudes for attenuation loss & beam spreading
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#   - comments starting with ## are taken verbatim from the original implementations
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#   - the basic idea of the time lagging implemented in this code is similar
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#     to the one implemented in Martin Visbeck's bestlag.m
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#   - for SeaBird files:
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#       - CTD elapsed time is estimated from recno * CTD{sampint}
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#       - first elapsed time is added on output
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#   - output elapsed time is from CTD to allow yoyo processing without loss of
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#     time information
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#   - CTD{elapsed} is undefined for records before instrument is in the water
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#   - ITS-90 temp field in degC required
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#   - salin field prequired
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#   - pressure field in dbar required
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#   - -i should be set to the number that's added to LADCP_elapsed to make the two
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#     time series overplot nicely
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# HISTORY:
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#   Sep 16, 2010: - incepted
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#   Oct 13, 2010: - first working version
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#   Oct 14, 2010: - renamed from LADCPshear
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#   Oct 19, 2010: - added -a)coustic backscatter profiles
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#   Oct 20, 2010: - added -2)dary CTD sensors
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#   Oct 23, 2010: - added magnetic-declination correction
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#   Oct 26, 2010: - added tilt calculation
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#   Dec  9, 2010: - added support for ASCII CTD files
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#   Dec 10, 2010: - change -w) default to 120s
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#                 - changed nshear output to 0 from nan when there are no samples
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#   Dec 27, 2010: - changed sign of -l to accept lag output from [LADCP_w]
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#   Jan 10, 2011: - -o => -k added new -o
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#                 - added code to fill CTD sound vel gaps
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#   Jan 22, 2011: - added -g) lat,lon
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#                 - added -c)ompass corr
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#   Jun 15, 2011: - added mean backscatter profile to default output
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#   Jul  7, 2011: - added support for $BT_* processing parameters
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#                 - replaced old per-bin acoustic backscatter profile output by
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#                   acoustic backscatter depth-time-series
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#                 - disabled seabed and acoustic backscatter code when not required (e.g. UL)
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#                 - made non-diagnostic output terser
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#   Jul 11, 2011: - changed default output to .tds and added -p)rofile option
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#   Jul 14, 2011: - added -u)se D[eines1999][V[isbeck2004]]
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#   Jul 15, 2011: - changed output bin# to 1-based in -a output
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#                 - added T[hurnherr11] -u)se option
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#                 - added $CTD{first_elapsed}
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#   Jul 27, 2011: - replaced ndata by nsamp
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#   Feb  5, 2012: - added profile max depth consistency check
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#   Feb 19, 2912: - added elapsed time to shear profile output
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#                 - replaced "nshear" output field by "nsamp"
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#                 - BUG: bottom of profiles was incorrect when dc max depth > uc max depth
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#                 - BUG: profile depth consistency check did not work for partial-depth yoyo casts
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#   Apr 10, 2012: - changed default backscatter correction to Deines (1999)
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#                 - improved and relaxed depth consistency check
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#   Apr 11, 2012: - BUG: double comma that did not affect the output
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#                 - BUG: code had assumed, but not ensured, that first CTD scan is valid
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#   Apr 13, 2012: - removed -s argument from dependencies
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#	Apr 17, 2012: - BAD BUG: magdec code call was bad and did not return correct value. ever.
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#	Apr 18, 2012: - replaced Sv.n by Sv.nsamp
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#	May 16, 2012: - adapted to ANTSlib V5.0
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#				  - added support for -r)DI BT data
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($ANTS)    = (`which ANTSlib` =~ m{^(.*)/[^/]*$});
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($PERL_TOOLS) = (`which mkProfile` =~ m{^(.*)/[^/]*$});
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($LADCPPROC)  = ($0 =~ m{^(.*)/[^/]*$});
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require "$ANTS/ants.pl";
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require "$ANTS/libEOS83.pl";
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require "$ANTS/libstats.pl";
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require "$LADCPPROC/LADCPproc.loadCTD";
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require "$LADCPPROC/LADCPproc.bestLag";
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require "$LADCPPROC/LADCPproc.BT";
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require "$LADCPPROC/LADCPproc.backscatter";
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require "$LADCPPROC/LADCPproc.UHcode";
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require "$PERL_TOOLS/RDI_BB_Read.pl";
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require "$PERL_TOOLS/RDI_Coords.pl";
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require "$PERL_TOOLS/RDI_Utils.pl";
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$antsParseHeader = 0;
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&antsUsage('24a:b:c:df:g:i:kl:n:o:p:rs:t:u:w:',2,
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    '[use -2)dary CTD sensor pair]',
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    '[require -4)-beam LADCP solutions]',
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    '[use -r)DI bottom-track data]',
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    '[-s)etup <file>] [-g)ps <lat,lon>]',
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    '[-c)ompass-corr <offset,cos-fac,sin-fac>]',
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    '[enable -p)PI editing]',
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    '[-o)utput grid <resolution[5m]>]',
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    '[-i)nitial LADCP time lag <guestimate>]',
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    '[-l)ag LADCP <by>] [auto-lag -w)indow <size[120s]>] [-n) <auto-lag windows[20]]',
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    '[correct echo amplitude -u)sing D[eines99]|V[isbeck04]|T[hurnherr11]|n[ocorr]',
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    '[-d)iagnostic screen output]',
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    'output: [shear-p)rofile <file>] [-t)ime series <file>] [-f)lag <file>] [-b)ottom-track <file>]',
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    '        [-a)coustic backscatter <dts-file] [bottom-trac-k) profs]',
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    '<RDI file> <SeaBird file>');
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$RDI_Coords::minValidVels = 4 if ($opt_4);
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&antsFloatOpt($opt_l);
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&antsCardOpt(\$opt_w,120);
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    # old default of -w 30 does not work if there are significant ambiguity-velocity
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    # problems, as is the case, e.g., with 2010_DIMES_US2 station 142
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    # old default of -w 60 did not work for DIMES_UK2 station 4 (DL), possibly again
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    # related to ambiguity velocity
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&antsCardOpt(\$opt_n,20);
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#&antsFileOpt($opt_s);      # DON'T, AS THIS WILL ADD AN UNWANTED DEPENDCY
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&antsFloatOpt($opt_i);
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&antsCardOpt(\$opt_o,5);
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if (defined($opt_u)) {
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   121
    croak("$0: cannot decode -u $opt_u\n")
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   122
        unless ($opt_u =~ /^[dDvVtTn]/);
6
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parents: 4
diff changeset
   123
} else {
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48b2d27aaebf after fixing bad magdec bug
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   124
    $opt_u = 'Deines99';
6
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parents: 4
diff changeset
   125
}
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parents: 4
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   126
2
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   127
if (defined($opt_g)) {
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48b2d27aaebf after fixing bad magdec bug
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diff changeset
   128
    ($CTD{lat},$CTD{lon}) = split(',',$opt_g);
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   129
    croak("$0: cannot decode -g $opt_g\n")
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diff changeset
   130
        unless numberp($CTD{lat}) && numberp($CTD{lon});
2
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parents: 1
diff changeset
   131
}
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parents: 1
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   132
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   133
if (defined($opt_c)) {
9
48b2d27aaebf after fixing bad magdec bug
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diff changeset
   134
    ($CC_offset,$CC_cos_fac,$CC_sin_fac) = split(',',$opt_c);
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diff changeset
   135
    croak("$0: cannot decode -c $opt_c\n")
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   136
        unless numberp($CC_offset) && numberp($CC_cos_fac) && numberp($CC_sin_fac);
2
16726a31a399 pre IWISE
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parents: 1
diff changeset
   137
}
9
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diff changeset
   138
    
0
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   139
$LADCP_file = &antsFileArg();
9
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   140
$CTD_file   = &antsFileArg();
0
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   141
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&antsAddParams('LADCP_file',$LADCP_file,'CTD_file',$CTD_file);
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parents:
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   143
&antsActivateOut();
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   144
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   145
#----------------------------------------------------------------------
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   146
# Step 1: Read LADCP Data
0
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   147
#----------------------------------------------------------------------
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   149
print(STDERR "Reading LADCP data ($LADCP_file)...");
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   150
readData($LADCP_file,\%LADCP);
3
711dd29cb6dd post 2011_IWISE
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diff changeset
   151
printf(STDERR "\n\t%d ensembles",scalar(@{$LADCP{ENSEMBLE}})) if ($opt_d);
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   152
print(STDERR "\n");
0
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   153
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   154
#----------------------------------------------------------------------
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parents:
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   155
# Step 2: Set Processing Parameters
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   156
#----------------------------------------------------------------------
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parents:
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   157
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parents:
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   158
print(STDERR "Setting processing parameters...\n");
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parents:
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   159
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   160
printf(STDERR "\tloading $LADCPPROC/LADCPproc.defaults...\n");
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parents:
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   161
require "$LADCPPROC/LADCPproc.defaults";
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parents:
diff changeset
   162
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   163
if (defined($opt_s)) {
9
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   164
    print(STDERR "\tloading $opt_s...\n");
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   165
    require $opt_s;
0
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parents:
diff changeset
   166
}
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parents:
diff changeset
   167
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parents:
diff changeset
   168
if ($LADCP{BLANKING_DISTANCE} == 0) {
9
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   169
    print(STDERR "\t\tBLANKING_DISTANCE == 0 => excluding all data from bin 1\n")
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   170
        if ($opt_d);
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   171
    $wbin_start = 2 unless ($wbin_start > 2);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   172
    $ubin_start = 2 unless ($ubin_start > 2);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   173
    $shbin_start = 2 unless ($shbin_start > 2);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   174
    $BT_bin_start = 2 unless ($BT_bin_start > 2);
0
de00d0f32431 initial version to process P403 yoyo
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parents:
diff changeset
   175
}
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parents:
diff changeset
   176
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   177
&antsAddParams('ADCP_orientation',
9
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   178
        $LADCP{ENSEMBLE}[0]->{XDUCER_FACING_UP} ? 'uplooker' : 'downlooker');
0
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parents:
diff changeset
   179
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   180
$SHEAR_PREGRID_DZ = 20;
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   181
$GRID_DZ = $opt_o;
0
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parents:
diff changeset
   182
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   183
#----------------------------------------------------------------------
1
54222c82435f after DIMES UK2
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parents: 0
diff changeset
   184
# Step 3: Read CTD data
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parents: 0
diff changeset
   185
#----------------------------------------------------------------------
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parents: 0
diff changeset
   186
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parents: 0
diff changeset
   187
print(STDERR "Reading CTD data ($CTD_file)...");
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A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   188
readCTD($CTD_file,\%CTD);
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   189
printf(STDERR "\n\t%d scans",scalar(@{$CTD{press}})) if ($opt_d);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   190
print(STDERR "\n");
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   191
9
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   192
my($year)  = substr($LADCP{ENSEMBLE}[0]->{DATE},6,4);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   193
my($month) = substr($LADCP{ENSEMBLE}[0]->{DATE},0,2);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   194
my($day  ) = substr($LADCP{ENSEMBLE}[0]->{DATE},3,2);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   195
my($magdec,$maginc,$h_strength,$v_strength) = split('\s+',`magdec $CTD{lon} $CTD{lat} $year $month $day`);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   196
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   197
croak("$0: unknown magnetic declination\n")
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   198
	unless defined($magdec);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   199
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   200
&antsAddParams('magnetic_declination',$magdec);
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   201
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   202
#----------------------------------------------------------------------
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   203
# Step 4: Pre-Process CTD & LADCP Data
0
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parents:
diff changeset
   204
#----------------------------------------------------------------------
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parents:
diff changeset
   205
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   206
printf(STDERR "Pre-processing data...");
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   207
printf(STDERR "\n\tCTD...") if ($opt_d);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   208
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   209
#------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   210
# clean CTD pressure data
de00d0f32431 initial version to process P403 yoyo
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parents:
diff changeset
   211
#------------------------
9
48b2d27aaebf after fixing bad magdec bug
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diff changeset
   212
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   213
my($pSpikes) = 0;
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   214
for (my($r)=1; $r<@{$CTD{press}}; $r++) {
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   215
	$pSpikes++,$CTD{press}[$r]=nan
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   216
		if (abs($CTD{press}[$r]-$CTD{press}[$r-1])/$CTD{sampint} > 2);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   217
}
9
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   218
print(STDERR "\n\t\t$pSpikes CTD pressure spikes removed")
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   219
	if ($pSpikes>0 && $opt_d);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   220
9
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   221
#-----------------------------------
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   222
# trim "preamble" without valid data
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   223
#-----------------------------------
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   224
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   225
my($r) = 0;
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   226
until (numberp($CTD{press}[$r]) && numberp($CTD{temp}[$r]) && numberp($CTD{salin}[$r])) { $r++ }
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   227
splice(@{$CTD{press}},0,$r);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   228
splice(@{$CTD{temp}},0,$r);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   229
splice(@{$CTD{salin}},0,$r);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   230
print(STDERR "\n\t\t$r leading CTD scans without valid data removed")
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   231
	if ($r>0 && $opt_d);
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   232
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   233
#--------------------------------------------------
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   234
# calculate w and find deepest & shallowest records
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   235
#--------------------------------------------------
9
48b2d27aaebf after fixing bad magdec bug
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parents: 8
diff changeset
   236
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   237
$CTD{maxpress} = -9e99;
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   238
$CTD{minpress} =  9e99;
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   239
for (my($r)=1; $r<@{$CTD{press}}-1; $r++) {
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   240
	$CTD{w}[$r] = 0.99*($CTD{press}[$r+1] - $CTD{press}[$r-1]) / (2*$CTD{sampint});
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   241
	if ($CTD{press}[$r] > $CTD{maxpress}) {
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   242
		$CTD{maxpress} = $CTD{press}[$r];
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   243
		$CTD{atbottom} = $r;
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   244
    }										
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   245
	if ($CTD{press}[$r] < $CTD{minpress}) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   246
		$CTD{minpress} = $CTD{press}[$r];
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   247
		$CTD{attop} = $r;
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   248
    }										
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   249
}
9
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   250
printf(STDERR "\n\t\tmin/max pressure [%d/%ddbar] at scans#%d/%d",
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   251
					$CTD{minpress},$CTD{maxpress},$CTD{attop},$CTD{atbottom})
1
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parents: 0
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   252
	if $opt_d;
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parents: 0
diff changeset
   253
0
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parents:
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   254
#----------------------------------------------------------------------
1
54222c82435f after DIMES UK2
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parents: 0
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   255
# Step 4b: Pre-Process LADCP Data
0
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   256
#----------------------------------------------------------------------
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   257
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
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   258
print(STDERR "\n\tLADCP...") if ($opt_d);
0
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parents:
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   259
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parents:
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   260
#-------------------------------------------
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parents:
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   261
# transform to earth coordinates if required
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   262
#-------------------------------------------
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   263
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   264
$U = 0;		# velocity indices
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   265
$V = 1;
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   266
$W = 2;
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   267
$E = 3;
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   268
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   269
$LADCP{HEADING_BIAS} = -$magdec;
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parents:
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   270
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parents:
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   271
if ($LADCP{BEAM_COORDINATES}) {
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   272
	print(STDERR "\n\t\ttransforming beam to Earth coordinates...")
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   273
		if ($opt_d);
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   274
	for (my($ens)=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   275
		$LADCP{ENSEMBLE}[$ens]->{TILT} = &angle_from_vertical($LADCP{ENSEMBLE}[$ens]->{PITCH},$LADCP{ENSEMBLE}[$ens]->{ROLL});
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   276
		for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   277
			@{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]} =
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   278
				velInstrumentToEarth(\%LADCP,$ens,velBeamToInstrument(\%LADCP,@{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]}));
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
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   279
			@{$LADCP{ENSEMBLE}[$ens]->{PERCENT_GOOD}[$bin]} =					# fake it to fool ref_lr_w
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   280
				(0,0,0,defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$W]) ? 100 : 0);
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   281
		}
12
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   282
		@{$LADCP{ENSEMBLE}[$ens]->{BT_VELOCITY}} =
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   283
			velInstrumentToEarth(\%LADCP,$ens,velBeamToInstrument(\%LADCP,@{$LADCP{ENSEMBLE}[$ens]->{BT_VELOCITY}}));
0
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   284
	}
12
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   285
0
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   286
	$LADCP{BEAM_COORDINATES} = 0;
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   287
	$LADCP{EARTH_COORDINATES} = 1;
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   288
	unless ($opt_4) {
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   289
		print(STDERR "\n\t\t\t3-beam solutions: $RDI_Coords::threeBeam_1 $RDI_Coords::threeBeam_2 $RDI_Coords::threeBeam_3 $RDI_Coords::threeBeam_4\n")
0
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   290
			if ($opt_d);
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   291
		&antsAddParams('3_beam_solutions',"$RDI_Coords::threeBeam_1 $RDI_Coords::threeBeam_2 $RDI_Coords::threeBeam_3 $RDI_Coords::threeBeam_4");
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   292
	}
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   293
} elsif ($LADCP{EARTH_COORDINATES}) {
2
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   294
	if ($opt_d) {
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   295
		if ($opt_c) {
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   296
			printf(STDERR "\n\t\tcalculating tilt and correcting for compass error and magnetic declination of %.1f deg...\n",$magdec);
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   297
		} else {
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   298
			printf(STDERR "\n\t\tcalculating tilt and correcting for magnetic declination of %.1f deg...\n",$magdec);
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   299
		}
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   300
	}
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   301
	for (my($ens)=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   302
		$LADCP{ENSEMBLE}[$ens]->{TILT} = &angle_from_vertical($LADCP{ENSEMBLE}[$ens]->{PITCH},$LADCP{ENSEMBLE}[$ens]->{ROLL});
2
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   303
		my($hdg) = rad($LADCP{ENSEMBLE}[$ens]->{HEADING});
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   304
		$LADCP{HEADING_BIAS} = ($CC_offset + $CC_cos_fac*cos($hdg) + $CC_sin_fac*sin($hdg)) - $magdec
16726a31a399 pre IWISE
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 1
diff changeset
   305
			if ($opt_c);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   306
		for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   307
			@{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]} =
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   308
				velApplyHdgBias(\%LADCP,$ens,@{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   309
		}
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   310
	}
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   311
} else {
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   312
	croak("$0: can only handle beam or earth coordinates\n")
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   313
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   314
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   315
#------------------------------------------------------
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   316
# construct a depth-vs-time "profile" from the raw data
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   317
#------------------------------------------------------
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A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   318
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   319
print(STDERR "\t\tconstructing profile time series...")
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   320
	if ($opt_d);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   321
	
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   322
($LADCP_start,$LADCP_end,$LADCP_bottom,$w_gap_time,$zErr,$maxz) =
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   323
    mk_prof(\%LADCP,0,undef,1,6,70,0.1,9999);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   324
croak("\n$LADCP_file: no good ensembles found\n")
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   325
    unless defined($LADCP_start);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   326
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   327
if ($opt_d) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   328
	printf(STDERR "\n\t\t\tStart of cast    : %s (#%5d) at %6.1fm\n",
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   329
	                    $LADCP{ENSEMBLE}[$LADCP_start]->{TIME},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   330
	                    $LADCP{ENSEMBLE}[$LADCP_start]->{NUMBER},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   331
	                    $LADCP{ENSEMBLE}[$LADCP_start]->{DEPTH});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   332
	printf(STDERR "\t\t\tBottom of cast   : %s (#%5d) at %6.1fm\n",
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   333
	                    $LADCP{ENSEMBLE}[$LADCP_bottom]->{TIME},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   334
	                    $LADCP{ENSEMBLE}[$LADCP_bottom]->{NUMBER},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   335
	                    $LADCP{ENSEMBLE}[$LADCP_bottom]->{DEPTH});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   336
	printf(STDERR "\t\t\tEnd of cast      : %s (#%5d) at %6.1fm",
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   337
	                    $LADCP{ENSEMBLE}[$LADCP_end]->{TIME},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   338
	                    $LADCP{ENSEMBLE}[$LADCP_end]->{NUMBER},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   339
	                    $LADCP{ENSEMBLE}[$LADCP_end]->{DEPTH});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   340
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   341
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   342
print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   343
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   344
my($LADCP_prof_range) = $LADCP{ENSEMBLE}[$LADCP_bottom]->{DEPTH} -
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   345
							min($LADCP{ENSEMBLE}[$LADCP_start]->{DEPTH},$LADCP{ENSEMBLE}[$LADCP_end]->{DEPTH});
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   346
croak(sprintf("$0: LADCP profile depth range (%dm) inconsistent with max CTD pressure range (%ddbar)\n",
8
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   347
		$LADCP_prof_range,$CTD{maxpress}-$CTD{minpress}))
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 7
diff changeset
   348
	if (abs($LADCP_prof_range-($CTD{maxpress}-$CTD{minpress}))/(0.99*($CTD{maxpress}-$CTD{minpress})) > 0.2);
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   349
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   350
#----------------------------------------------------------------------
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   351
# Step 5: Add CTD to LADCP Data & correct velocities for sound speed
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   352
#	- {DEPTH} field is overwritten!
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   353
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   354
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   355
print(STDERR "Matching CTD to LADCP time series...");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   356
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   357
$opt_l = defined($opt_l) ? -$opt_l : &lagLADCP2CTD();
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   358
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   359
print(STDERR "Associating CTD data with LADCP ensembles...");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   360
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   361
for (my($min_depth)=9e99,my($ens)=$LADCP_start; $ens<=$LADCP_end; $ens++) {
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   362
	my($lastSvel); 
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   363
	my($r) = int(($LADCP{ENSEMBLE}[$ens]->{ELAPSED_TIME} - $opt_l) / $CTD{sampint});
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   364
	if ($r < 0 && $ens == $LADCP_start) {
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   365
		$r = int(($LADCP{ENSEMBLE}[++$ens]->{ELAPSED_TIME} - $opt_l) / $CTD{sampint})
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   366
			while ($r < 0);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   367
		printf(STDERR "\n\tCTD data begin with instrument already in water => skipping %ds of LADCP data",
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   368
			$LADCP{ENSEMBLE}[$ens]->{ELAPSED_TIME}-$LADCP{ENSEMBLE}[$LADCP_start]->{ELAPSED_TIME});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   369
		$LADCP_start = $ens;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   370
	}
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   371
	if ($r > $#{$CTD{press}}) {
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   372
		printf(STDERR "\n\tCTD data end while instrument is still in water => truncating %ds of LADCP data",
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   373
			$LADCP{ENSEMBLE}[$LADCP_end]->{ELAPSED_TIME}-$LADCP{ENSEMBLE}[$ens]->{ELAPSED_TIME})
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   374
				if ($opt_d);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   375
		$LADCP_end = $ens - 1;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   376
		last;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   377
	}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   378
	my($dr);
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   379
	for ($dr=0; !numberp($CTD{press}[$r+$dr]); $dr--) {}
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   380
	$LADCP{ENSEMBLE}[$ens]->{DEPTH} = depth($CTD{press}[$r+$dr],$CTD{lat});
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   381
	if ($LADCP{ENSEMBLE}[$ens]->{DEPTH} < $min_depth) {
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   382
		$min_depth = $LADCP{ENSEMBLE}[$ens]->{DEPTH};
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   383
		$LADCP_top = $ens;
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   384
	}
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   385
	$LADCP{ENSEMBLE}[$ens]->{CTD_W} = $CTD{w}[$r];
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   386
	$LADCP{ENSEMBLE}[$ens]->{CTD_TEMP} = $CTD{temp}[$r];
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   387
	$LADCP{ENSEMBLE}[$ens]->{CTD_SVEL} = sVel($CTD{salin}[$r],$CTD{temp}[$r],$CTD{press}[$r+$dr]);
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   388
	if (numberp($LADCP{ENSEMBLE}[$ens]->{CTD_SVEL})) {
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   389
		$lastSvel = $LADCP{ENSEMBLE}[$ens]->{CTD_SVEL};
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   390
	} else {
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   391
		$LADCP{ENSEMBLE}[$ens]->{CTD_SVEL} = $lastSvel;
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   392
	}
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   393
	my($sscorr) = $LADCP{ENSEMBLE}[$ens]->{CTD_SVEL} / $LADCP{ENSEMBLE}[$ens]->{SPEED_OF_SOUND};
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   394
	for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   395
		next unless defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$W]);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   396
		$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$U] *= $sscorr;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   397
		$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$V] *= $sscorr;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   398
		$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$W] *= $sscorr;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   399
    }
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   400
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   401
9
48b2d27aaebf after fixing bad magdec bug
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 8
diff changeset
   402
&antsAddParams('top_depth',round($LADCP{ENSEMBLE}[$LADCP_top]->{DEPTH}),
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   403
			   'bottom_depth',round($LADCP{ENSEMBLE}[$LADCP_bottom]->{DEPTH}),
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   404
			   'start_date',$LADCP{ENSEMBLE}[$LADCP_start]->{DATE},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   405
			   'start_time',$LADCP{ENSEMBLE}[$LADCP_start]->{TIME},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   406
			   'bottom_date',$LADCP{ENSEMBLE}[$LADCP_bottom]->{DATE},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   407
			   'bottom_time',$LADCP{ENSEMBLE}[$LADCP_bottom]->{TIME},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   408
			   'end_date',$LADCP{ENSEMBLE}[$LADCP_end]->{DATE},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   409
			   'end_time',$LADCP{ENSEMBLE}[$LADCP_end]->{TIME});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   410
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   411
print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   412
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   413
#----------------------------------------------------------------------
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   414
# Step 6: Calculate Acoustic Backscatter Profile
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   415
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   416
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   417
print(STDERR "Calculating acoustic backscatter profiles...");
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   418
mk_backscatter_profs($LADCP_start,$LADCP_end);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   419
print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   420
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   421
#----------------------------------------------------------------------
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   422
# Step 7: Find Seabed
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   423
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   424
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   425
if ($LADCP{ENSEMBLE}[$LADCP_start]->{XDUCER_FACING_DOWN}) {
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   426
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   427
	print(STDERR "Finding seabed...");
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   428
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   429
	print(STDERR "\n\tin acoustic backscatter profiles...") if ($opt_d);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   430
	($water_depth,$sig_water_depth) =
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   431
		find_backscatter_seabed($LADCP{ENSEMBLE}[$LADCP_bottom]->{DEPTH});
12
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   432
	printf(STDERR "\n\t\twater depth = %d(+-%.1f)m",$water_depth,$sig_water_depth)
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   433
		if ($opt_d);
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   434
	
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   435
	print(STDERR "\n\tin RDI BT data...") if ($opt_d);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   436
	($BT_water_depth,$sig_BT_water_depth) = 
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   437
		find_seabed(\%LADCP,$LADCP_bottom,$LADCP{BEAM_COORDINATES});
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   438
	if (defined($BT_water_depth)) {
12
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   439
		printf(STDERR "\n\t\twater depth = %d(+-%.1f)m",$BT_water_depth,$sig_BT_water_depth)
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   440
			if ($opt_d);
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   441
	} else {
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   442
		printf(STDERR "\n\t\tno seabed found") if ($opt_d);
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   443
	}
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   444
	
12
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   445
	if ($opt_r) {													# use RDI BT data
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   446
		$water_depth = $BT_water_depth;
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   447
		$sig_water_depth = $sig_BT_water_depth;
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   448
    }
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   449
    $min_hab = $water_depth - $LADCP{ENSEMBLE}[$LADCP_bottom]->{DEPTH};
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   450
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   451
	if (defined($water_depth)) {
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   452
		printf(STDERR "\n\twater depth      = %d(+-%.1f)m",$water_depth,$sig_water_depth);
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   453
		printf(STDERR "\n\tclosest approach = %dmab",$min_hab);
65582c172355 V1.0beta3
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   454
    } else {	
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   455
		print(STDERR "\n\tno seabed found\n");
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   456
		print(STDERR "\n\tunknown water depth => PPI editing disabled\n")
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   457
			if ($opt_d);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   458
		$clip_margin = 0;
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   459
	}
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   460
	
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   461
	print(STDERR "\n");
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   462
	
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   463
} else { # UPLOOKER
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   464
	$water_depth = $sig_water_depth = $min_hab = nan;
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   465
	print(STDERR "Uplooker data => PPI editing disabled\n")
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   466
		if ($opt_d);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   467
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   468
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   469
#----------------------------------------------------------------------
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   470
# Step 8: Edit Data & also produce depth-time-series output vial callback
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   471
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   472
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   473
print(STDERR "Calculating shear profiles & producing time-depth-series (.tds) output...");
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   474
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   475
	#--------------------------------------------------------------------------------
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   476
	# callback routine to output .tds data, called once each for down-/upcasts after
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   477
	# shear has been gridded. Note that only the nominal (bin center) depth is known
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   478
	# for each sample in this version.
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   479
	
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   480
	sub outTDseries($)
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   481
	{
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   482
		my($downcast) = @_; # also use local @[uvw]sh_vals[][]
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   483
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   484
		if ($downcast) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   485
			my($mingi);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   486
			for ($mingi=0; $mingi<@ush_vals; $mingi++) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   487
				last if @{$ush_vals[$mingi]};
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   488
	        }
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   489
			&antsAddParams('min_ens',$LADCP_start,'min_elapsed',$LADCP{ENSEMBLE}[$LADCP_start]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   490
						   'max_ens',$LADCP_end,'max_elapsed',$LADCP{ENSEMBLE}[$LADCP_end]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   491
						   'min_depth',depthOfGI($mingi),'max_depth',depthOfGI($#ens_vals));
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   492
			for (my($gi)=0; $gi<@ush_vals; $gi++) {
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   493
				for (my($i)=0; $i<@{$ush_vals[$gi]}; $i++){
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   494
					&antsOut($ens_vals[$gi][$i],$LADCP{ENSEMBLE}[$ens_vals[$gi][$i]]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   495
							 $downcast,depthOfGI($gi),$ush_vals[$gi][$i],$vsh_vals[$gi][$i],$wsh_vals[$gi][$i]);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   496
				}
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   497
	        }
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   498
		} else {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   499
			for (my($gi)=$#ush_vals; $gi>=0; $gi--) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   500
				for (my($i)=0; $i<@{$ush_vals[$gi]}; $i++) {
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   501
					&antsOut($ens_vals[$gi][$i],$LADCP{ENSEMBLE}[$ens_vals[$gi][$i]]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   502
							 $downcast,depthOfGI($gi),$ush_vals[$gi][$i],$vsh_vals[$gi][$i],$wsh_vals[$gi][$i]);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   503
				}
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   504
	        }
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   505
	    }
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   506
	} # sub outDSseries
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   507
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   508
	#--------------------------------------------------------------------------------
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   509
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   510
@antsNewLayout = ('ens','elapsed','downcast','depth','u_z','v_z','w_z');
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   511
$commonParams = $antsCurParams;
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   512
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   513
&antsAddParams('ubin_start',$ubin_start,'ubin_end',$ubin_end,		# record processing params
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   514
			   'wbin_start',$wbin_start,'wbin_end',$wbin_end,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   515
			   'shbin_start',$shbin_start,'shbin_end',$shbin_end,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   516
			   'w_ref_bin',$w_ref_bin,'w_dif',$w_dif,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   517
			   'wake_hd_dif',$wake_hd_dif,'wake_ang_min',$wake_ang_min,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   518
			   'min_wake_w',$min_wake_w,'n_wake_bins',$n_wake_bins,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   519
			   'e_max',$e_max,'min_cor',$min_cor,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   520
			   'max_shdev',$max_shdev,'max_shdev_sum',$max_shdev_sum,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   521
			   'water_depth',round($water_depth),'water_depth.sig',round($sig_water_depth),
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   522
			   'min_hab',round($min_hab),'PPI_editing_enabled',$PPI_editing_enabled,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   523
			   'clip_margin',$clip_margin,'first_clip_bin',$first_clip_bin,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   524
			   'Svbin_start',$Svbin_start,'Svbin_end',$Svbin_end,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   525
			   'BT_bin_start',$BT_bin_start,'BT_bin_search_above',$BT_bin_search_above,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   526
			   'BT_max_bin_spread',$BT_max_bin_spread,'BT_max_w_difference',$BT_max_w_difference,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   527
);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   528
if (defined($BT_min_depth)) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   529
	&antsAddParams('BT_min_depth',$BT_min_depth,'BT_max_depth',$BT_max_depth);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   530
} else {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   531
	&antsAddParams('BT_max_depth_error',$BT_max_depth_error);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   532
}
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   533
$fullParams = $antsCurParams;
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   534
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   535
$LADCP_start = 1 if ($LADCP_start == 0);							# ensure that there is previous ensemble
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   536
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   537
print(STDERR "\n\tdowncast...") if ($opt_d);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   538
edit_velocity($LADCP_start,$LADCP_bottom);							# downcast
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   539
calc_shear($LADCP_start,$LADCP_bottom,$SHEAR_PREGRID_DZ,0);			# pre-grid shear @SHEAR_PREGRID_DZm resolution
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   540
calc_shear($LADCP_start,$LADCP_bottom,$GRID_DZ,1);					# calculate final gridded shear profile
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   541
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   542
@dc_sh_n = @sh_n;													# save downcast results
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   543
@dc_ush_mu = @ush_mu; @dc_ush_sig = @ush_sig;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   544
@dc_vsh_mu = @vsh_mu; @dc_vsh_sig = @vsh_sig;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   545
@dc_wsh_mu = @wsh_mu; @dc_wsh_sig = @wsh_sig;
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   546
@dc_esh_mu = @esh_mu;
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   547
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   548
print(STDERR "\n\tupcast...") if ($opt_d);
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   549
edit_velocity($LADCP_end,$LADCP_bottom);							# upcast
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   550
calc_shear($LADCP_end,$LADCP_bottom,$SHEAR_PREGRID_DZ,0);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   551
calc_shear($LADCP_end,$LADCP_bottom,$GRID_DZ,1);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   552
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   553
@uc_sh_n = @sh_n;													# save upcast results
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   554
@uc_ush_mu = @ush_mu; @uc_ush_sig = @ush_sig;
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   555
@uc_vsh_mu = @vsh_mu; @uc_vsh_sig = @vsh_sig;
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   556
@uc_wsh_mu = @wsh_mu; @uc_wsh_sig = @wsh_sig;
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   557
@uc_esh_mu = @esh_mu;
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   558
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   559
print(STDERR "\n\tcombined...") if ($opt_d);
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   560
my($nsh) = (@dc_ush_mu > @uc_ush_mu) ? scalar(@dc_ush_mu) : scalar(@uc_ush_mu);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   561
for (my($gi)=0; $gi<$nsh; $gi++) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   562
	if (($gi<@dc_ush_mu&&$dc_sh_n[$gi]>0) && ($gi<@uc_ush_mu&&$uc_sh_n[$gi]>0)) {
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   563
		$sh_n[$gi] = $dc_sh_n[$gi] + $uc_sh_n[$gi];
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   564
		$ush_mu[$gi] = ($dc_sh_n[$gi]*$dc_ush_mu[$gi] + $uc_sh_n[$gi]*$uc_ush_mu[$gi]) / $sh_n[$gi];
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   565
		$vsh_mu[$gi] = ($dc_sh_n[$gi]*$dc_vsh_mu[$gi] + $uc_sh_n[$gi]*$uc_vsh_mu[$gi]) / $sh_n[$gi];
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   566
		$wsh_mu[$gi] = ($dc_sh_n[$gi]*$dc_wsh_mu[$gi] + $uc_sh_n[$gi]*$uc_wsh_mu[$gi]) / $sh_n[$gi];
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   567
		$esh_mu[$gi] = ($dc_sh_n[$gi]*$dc_esh_mu[$gi] + $uc_sh_n[$gi]*$uc_esh_mu[$gi]) / $sh_n[$gi];
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   568
		$ush_sig[$gi] = sqrt(($dc_sh_n[$gi]*$dc_ush_sig[$gi]**2 + $uc_sh_n[$gi]*$uc_ush_sig[$gi]**2) / $sh_n[$gi]);
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   569
		$vsh_sig[$gi] = sqrt(($dc_sh_n[$gi]*$dc_vsh_sig[$gi]**2 + $uc_sh_n[$gi]*$uc_vsh_sig[$gi]**2) / $sh_n[$gi]);
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   570
		$wsh_sig[$gi] = sqrt(($dc_sh_n[$gi]*$dc_wsh_sig[$gi]**2 + $uc_sh_n[$gi]*$uc_wsh_sig[$gi]**2) / $sh_n[$gi]);
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   571
	} elsif ($gi < @dc_ush_mu && $dc_sh_n[$gi] > 0) {
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   572
		$sh_n[$gi] = $dc_sh_n[$gi];
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   573
		$ush_mu[$gi]  = $dc_ush_mu[$gi];  $vsh_mu[$gi]  = $dc_vsh_mu[$gi];  $wsh_mu[$gi]  = $dc_wsh_mu[$gi];  $esh_mu[$gi]  = $dc_esh_mu[$gi];
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   574
		$ush_sig[$gi] = $dc_ush_sig[$gi]; $vsh_sig[$gi] = $dc_vsh_sig[$gi]; $wsh_sig[$gi] = $dc_wsh_sig[$gi]; 
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   575
	} elsif ($gi < @uc_ush_mu && $uc_sh_n[$gi] > 0) {
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   576
		$sh_n[$gi] = $uc_sh_n[$gi];
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   577
		$ush_mu[$gi]  = $uc_ush_mu[$gi];  $vsh_mu[$gi]  = $uc_vsh_mu[$gi];  $wsh_mu[$gi]  = $uc_wsh_mu[$gi];  $esh_mu[$gi]  = $uc_esh_mu[$gi];
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   578
		$ush_sig[$gi] = $uc_ush_sig[$gi]; $vsh_sig[$gi] = $uc_vsh_sig[$gi]; $wsh_sig[$gi] = $uc_wsh_sig[$gi]; 
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   579
	} else {
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   580
		$sh_n[$gi] = 0;
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   581
		$ush_mu[$gi]  = $vsh_mu[$gi]  = $wsh_mu[$gi]  = $esh_mu[$gi]  = nan;
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   582
		$ush_sig[$gi] = $vsh_sig[$gi] = $wsh_sig[$gi] = nan;
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   583
	}
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   584
}
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   585
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   586
print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   587
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   588
#----------------------------------------------------------------------
1
54222c82435f after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 0
diff changeset
   589
# Step 9: Get bottom track profile
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   590
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   591
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   592
if ($LADCP{ENSEMBLE}[$LADCP_start]->{XDUCER_FACING_DOWN}) {
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   593
	print(STDERR "Getting BT profile...");
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   594
	getBTprof($LADCP_start,$LADCP_end);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   595
	print(STDERR "\n");
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   596
}
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   597
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   598
#----------------------------------------------------------------------
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   599
# Step 10: Write Output Profiles if requested
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   600
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   601
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   602
if (defined($opt_p)) {
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   603
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   604
	print(STDERR "Writing shear profiles...");
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   605
	
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   606
	@antsNewLayout = ('depth','dc_elapsed','dc_nsamp','dc_u_z','dc_u_z.sig','dc_v_z','dc_v_z.sig','dc_w_z','dc_w_z.sig',
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   607
							  'uc_elapsed','uc_nsamp','uc_u_z','uc_u_z.sig','uc_v_z','uc_v_z.sig','uc_w_z','uc_w_z.sig',
10
196a179304ee 1.0beta
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 9
diff changeset
   608
							  'elapsed','nsamp','u_z','u_z.sig','v_z','v_z.sig','w_z','w_z.sig','Sv','Sv.nsamp');
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   609
							  
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   610
	&antsOut('EOF');
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   611
    close(STDOUT);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   612
	open(STDOUT,">$opt_p") || croak("$opt_p: $!\n");
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   613
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   614
	$antsCurParams = $fullParams;
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   615
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   616
	for (my($gi)=0; $gi<$nsh; $gi++) {
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   617
		&antsOut(depthOfGI($gi),										# depth in center of bin
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   618
				 $dc_esh_mu[$gi],										# downcast
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   619
				 numberp($dc_sh_n[$gi])?$dc_sh_n[$gi]:0,
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   620
				 $dc_ush_mu[$gi],$dc_ush_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   621
				 $dc_vsh_mu[$gi],$dc_vsh_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   622
				 $dc_wsh_mu[$gi],$dc_wsh_sig[$gi],
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   623
				 $uc_esh_mu[$gi],										# upcast
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   624
				 numberp($uc_sh_n[$gi])?$uc_sh_n[$gi]:0,
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   625
				 $uc_ush_mu[$gi],$uc_ush_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   626
				 $uc_vsh_mu[$gi],$uc_vsh_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   627
				 $uc_wsh_mu[$gi],$uc_wsh_sig[$gi],
7
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 6
diff changeset
   628
				 $esh_mu[$gi],$sh_n[$gi],								# combined
4
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   629
				 $ush_mu[$gi],$ush_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   630
				 $vsh_mu[$gi],$vsh_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   631
				 $wsh_mu[$gi],$wsh_sig[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   632
				 $nSv_prof[$gi]?$sSv_prof[$gi]/$nSv_prof[$gi]:nan,
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   633
				 $nSv_prof[$gi],
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   634
		);
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   635
	}
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   636
	
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   637
	print(STDERR "\n");
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 3
diff changeset
   638
} # if -p
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   639
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   640
#---------------------------------------
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   641
# Acoustic backscatter depth-time-series
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   642
#---------------------------------------
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   643
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   644
if (defined($opt_a)) {
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   645
	print(STDERR "Writing acoustic backscatter depth-time-series to <$opt_a>...");
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   646
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   647
	
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   648
	@antsNewLayout = ('ens','elapsed','CTD_depth','depth','bin','downcast',
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   649
					  'Sv_beam1','Sv_beam2','Sv_beam3','Sv_beam4','Sv.median');
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   650
	&antsOut('EOF');
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   651
    close(STDOUT);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   652
	open(STDOUT,">$opt_a") || croak("$opt_a: $!\n");
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   653
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   654
	$antsCurParams = $commonParams;
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   655
	&antsAddParams('min_elapsed',$LADCP{ENSEMBLE}[$LADCP_start]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   656
				   'max_elapsed',$LADCP{ENSEMBLE}[$LADCP_end]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   657
				   'min_depth',$LADCP{ENSEMBLE}[$LADCP_top]->{XDUCER_FACING_UP} ?
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   658
	   					&depthOfBin($LADCP_top,$LADCP{N_BINS}-1) : $LADCP{ENSEMBLE}[$LADCP_top]->{DEPTH},
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   659
				   'max_depth',$LADCP{ENSEMBLE}[$LADCP_bottom]->{XDUCER_FACING_UP} ?
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   660
	   					$LADCP{ENSEMBLE}[$LADCP_bottom]->{DEPTH} : &depthOfBin($LADCP_bottom,$LADCP{N_BINS}-1)
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   661
	);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   662
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   663
	for (my($ens)=$LADCP_start; $ens<=$LADCP_end; $ens++) {
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   664
		for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   665
			&antsOut($LADCP{ENSEMBLE}[$ens]->{NUMBER},
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   666
					 $LADCP{ENSEMBLE}[$ens]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   667
					 $LADCP{ENSEMBLE}[$ens]->{DEPTH},
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   668
					 &depthOfBin($ens,$bin),$bin+1,
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   669
					 ($ens <= $LADCP_bottom) ? 1 : 0,
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   670
					 @{$LADCP{ENSEMBLE}[$ens]->{SV}[$bin]},
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   671
					 median(@{$LADCP{ENSEMBLE}[$ens]->{SV}[$bin]})
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   672
			);
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   673
		}	 
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   674
	}
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   675
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   676
	print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   677
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   678
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   679
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   680
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   681
if (defined($opt_t)) {
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   682
	print(STDERR "Writing time series to <$opt_t>...");
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   683
	
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   684
	@antsNewLayout = ('ens','elapsed','depth','CTD_w','LADCP_w');
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   685
	&antsOut('EOF');
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   686
	$antsCurParams = $commonParams;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   687
	close(STDOUT);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   688
	open(STDOUT,">$opt_t") || croak("$opt_t: $!\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   689
	
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   690
	for (my($ens)=$LADCP_start; $ens<=$LADCP_end; $ens++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   691
		&antsOut($LADCP{ENSEMBLE}[$ens]->{NUMBER},
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   692
				 $LADCP{ENSEMBLE}[$ens]->{ELAPSED_TIME}+$CTD{first_elapsed}-$opt_l,
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   693
				 $LADCP{ENSEMBLE}[$ens]->{DEPTH},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   694
				 $LADCP{ENSEMBLE}[$ens]->{CTD_W},
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   695
				 $LADCP{ENSEMBLE}[$ens]->{W});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   696
	}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   697
	print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   698
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   699
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   700
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   701
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   702
if (defined($opt_b)) {
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   703
	print(STDERR "Writing bottom-track data to <$opt_b>...");
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   704
	
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   705
	@antsNewLayout = ('depth','u','v','w','u.sig','v.sig','w.sig','nsamp');
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   706
	&antsOut('EOF');
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   707
	$antsCurParams = $commonParams;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   708
	close(STDOUT);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   709
	open(STDOUT,">$opt_b") || croak("$opt_b: $!\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   710
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   711
	my($skipped);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   712
	for (my($gi)=0; $gi<@BT_nsamp; $gi++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   713
		$skipped = 1 if ($BT_nsamp[$gi] > 0);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   714
		next unless ($skipped);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   715
		&antsOut(depthOfGI($gi),$BTu[$gi],$BTv[$gi],$BTw[$gi],$BTu_sig[$gi],$BTv_sig[$gi],$BTw_sig[$gi],$BT_nsamp[$gi]);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   716
	}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   717
	print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   718
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   719
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   720
#----------------------------------------------------------------------
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   721
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   722
if (defined($opt_f)) {
3
711dd29cb6dd post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 2
diff changeset
   723
	print(STDERR "Writing data flags to <$opt_f>...");
0
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   724
	
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   725
	@antsNewLayout = ('ens');
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   726
	for (my($i)=1; $i<=$LADCP{N_BINS}; $i++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   727
		$antsNewLayout[$i] = "bin$i";
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   728
	}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   729
	&antsOut('EOF');
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   730
	$antsCurParams = $commonParams;
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   731
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   732
	close(STDOUT);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   733
	open(STDOUT,">$opt_f") || croak("$opt_f: $!\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   734
	
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   735
	&antsPrintHeaders(STDOUT,@antsNewLayout);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   736
	for (my($ens)=$LADCP_start; $ens<=$LADCP_end; $ens++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   737
		printf('%4d  ',$LADCP{ENSEMBLE}[$ens]->{NUMBER});
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   738
		for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   739
			printf("%02x ",$edit_flags[$ens][$bin]);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   740
		}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   741
		print($opt_R);
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   742
	}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   743
	
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   744
	print(STDERR "\n");
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   745
}
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   746
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   747
&antsExit();
de00d0f32431 initial version to process P403 yoyo
A.M. Thurnherr <athurnherr@yahoo.com>
parents:
diff changeset
   748