LADCP_w
author A.M. Thurnherr <ant@ldeo.columbia.edu>
Wed, 09 Jul 2014 15:19:27 -0400
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#!/usr/bin/perl
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#======================================================================
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#                    L A D C P _ W 
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#                    doc: Fri Dec 17 18:11:13 2010
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#                    dlm: Wed May 21 08:50:29 2014
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#                    (c) 2010 A.M. Thurnherr
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#                    uE-Info: 680 96 NIL 0 0 72 2 2 4 NIL ofnI
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#======================================================================
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# TODO:
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#	  detection so that editing stats make sense
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#	- own seabed detection (P403)
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#	- make upcast-flag valid for yoyo casts
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#	- make diagnostic output 3-beam field work for Earth coordinates
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#	- remove water-depth from BT code, which is not really used and a bit of an outlier
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#	  because mean and stddev are used instead of median/mad
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#	- read assumed ADCP soundspeed from data file, instead of assuming 1500m/s
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#	? use instrument tilt in sidelobe editing?
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$antsSummary = 'calculate vertical velocities from LADCP & CTD time series';
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# HISTORY:
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#	Dec 17, 2010: - created from [mergeCTD+LADCP]
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#	Dec 18, 2010: - made to work
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#	Dec 19, 2010: - improved considerably
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#	Dec 20, 2010: - onward
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#				  - BUG: depth-binning was off by 1 bin?!
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#				  - added binning correction for instrument tilt
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#	Dec 21, 2010: - added -h (seafloor depth)
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#	Dec 22, 2010: - BUG: had not applied soundspeed-correction to w
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#				  - debugged opt_d
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#	Dec 23, 2010: - continued implementation of soundspeed corrections
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#	Dec 24, 2010: - added winch_w, wave_w
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#				  - removed beampair velocities from code
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#	Dec 25, 2010: - adapted for surface-wave correction in terms of acceleration (CTD_w_t)
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#				  - removed elapsed_mismatch
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#				  - removed winch_w, wave_w
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#	Dec 26, 2010: - made -p output layout independent of -x to avoid Makefile problems
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#	Dec 30, 2010: - cleaned up some
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#				  - folded-in backscatter calculation from shear method
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#				  - folded-in BT calculation from shear method
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#	Dec 31, 2010: - added weighted mean w profile to output
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#	Jan  2, 2010: - BUG: BT_w.mad could bomb with division by 0
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#				  - BUG: division by zero if no valid data
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#	Jan  5, 2010: - adapted to allow for gaps in CTD time series
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#	Feb 16, 2011: - cosmetics
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#	Jun 22, 2011: - cosmetics
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#	Jun 23, 2011: - disabled error on large rms reflr w
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#				  - added -l
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#				  - removed CTD headers from output
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#	Jun 26, 2011: - added -u
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#				  - changed package correction from acceleration to velocity, because of
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#					Stan's Antarctic data set where accelerations are zero but package effects are
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#					there
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#	Jul  2, 2011: - increased tilt default to 15 degrees
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#	Jul  3, 2011: - replaced old package-velocity correction -x code by new beamvel correction
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#				  - removed -p
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#				  - replaced -d by residual (diagnostics) output
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#	Jul  4, 2011: - saved a snapshot in [Jul_04_2011]
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#				  - removed output of binned profile (but not calculation code, which is required for residual)
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#				  - BUG: firstGoodEns or lastGoodEns could end up in a reflr_w gap when valid LADCP data begin
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#						 or end with CTD in water
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#				  - moved rarely used option -s to -k
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#				  - added -s)kip <ens> option
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#				  - had to very very slightly relax an assertion (by 1e-10 seconds...)
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#	Aug  3, 2011: - added -z)ap to truncate range, based on Stan's 2009 data set (017-019 most clearly)
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#				    obs that final 2 velocities are outliers; could be due to color bar, should check with
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#					residuals
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#	Sep 22, 2011: - removed (commented out) CTD acceleration
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#				  - added basename to Parameter File Matching
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#	Sep 23, 2011: - cosmetics (lots)
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#				  - added -d)
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#	Oct  6, 2011: - removed old commented-out code (CTD acceleration & old -x)
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#				  - renamed time-series field names
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#				  - added uncorrected reflr w to time-series output
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#	Oct 10, 2011: - BUG: LADCP_w in .tds output had not been soundspeed corrected
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#				  - removed -x
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#				  - added "false-positives" editing filter
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#	Oct 11, 2011: - adapted to the new parameter file, removing a few options
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#	Oct 12, 2011: - added surface-layer editing
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#				  - made %min/max_depth/elapsed more accurate
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#	Oct 13, 2011: - fiddled
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#	Oct 14, 2011: - renamed .prof fields from .N to .nsamp
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#				  - added %output_basename
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#				  - removed all ">" from open to allow use in pipelines
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#				  - made <run-label> argument optional
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#				  - replaced stdout output by $w_out
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#				  - renamed _out to out_; output_basename to out_basename
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#	Oct 15, 2011: - added editWOutliers()
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#				  - added step to remove single-ping noise
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#	Oct 16, 2011: - BUG: ensemble and bin numbers in output files were off by 1
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#	Oct 17, 2011: - added default run label
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#				  - added out_BR
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#				  - BUG: closed STDOUT caused problems with tee in plotting scripts
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#				  - added %run_label
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#				  - added PostProcess.sh
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#	Oct 18, 2011: - BUG: %{min,max}_ens used ensemble indices, rather than numbers
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#				  - disabled false-positives editing (removes too much good data on 2011_IWISE)
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#	Oct 19, 2011: - BUG: time-series output included ensembles without valid w
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#				  - increased post-process sleep time to 30s
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#				  - added corr, Sv and echo_amplitude as new fields to w output
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#	Oct 20, 2011: - added editFarBins()
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#				  - added downcast flag to time-series output
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#				  - added ensemble number to LADCP-time-series output
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#	Oct 21, 2011: - BUG: Sv code was not enabled for uplooker data
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#	Oct 24, 2011: - added code to copy %lat/%lon from CTD data
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#				  - added %ADCP_freuquency, %ADCP_blanking_distance
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#				  - %LADCP_bin_length => %ADCP_bin_length
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#	Oct 26, 2011: - added $first_guess_timelag
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#	Oct 27, 2011: - added w12, w34, ww (pitch/roll-weighted average) to full output
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#				  - removed ww because it apparently does not improve the solutions
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#				  - moved editTilt() to after time-series calculation to allow
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#				    time matching to work even with strict tilt limit
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#				  - added correctAttitude()
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#	May 22, 2012: - adapted to ANTS V5
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#	Oct 15, 2012: - added $edit_data_hook
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#				  - HG COMMIT
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#				  - separated dc/uc time lagging
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#				  - removed support for TLhist
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#	Oct 16, 2012: - added support for dc/uc only solutions
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#	Oct 17, 2012: - renamed $edit_data_hook to $post_merge_hook
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#				  - HG COMMIT
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#	Feb 13, 2013: - BUG: CTD_neg_press_offset did not work for CTD time series with -ve starting depth
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#	Mar 23, 2013: - cosmetics
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#				  - HG COMMIT
13
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#	Apr 22, 2013: - removed opt_? variable aliases
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#	May  8, 2013: - replaced default run label (default to profiles) to make more readable directory structure
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#	May 14, 2013: - opt_m => w_max_lim
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#				  - BUG: time-series output had two messed-up fields
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#	May 15, 2013: - added w12 and w34 (2-beam solutions) to profile output
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#	May 16, 2013: - added CTD_w_tt to time-series & all-sample outputs
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#			      - -a => -d (CTD depth offset)
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#				  - implemented pressure-sensor acceleration correction (-a)
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#				  - added re-gridding of full profile after ping-coherent error removal
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#	Jun  5, 2013: - renamed $discard_velocities_from_beam to $bad_beam
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#				  - BUG: $bad_beam did not discard BT_VELOCITY data
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#	Jun  6, 2013: - BUG: error message had -a instead of -d
2788bf1bf1de after DIMES US5
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#	Sep  5, 2013: - BUG: w12/w34 do not work for earth-coordinate data, of course
15
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#	Apr 17, 2014: - BUG: edit_tilt was never called when all recorded bins are valid
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#	Apr 21, 2014: - updated comments
16
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#	May 19, 2014: - began adding support for PPI filtering
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#	May 20, 2014: - changed volume_scattering_coeff to Sv in output
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#				  - added editPPI()
0
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# CTD REQUIREMENTS
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#	- elapsed		elapsed seconds; see note below
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#	- depth
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#	- ss			sound speed
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#	- w				ddepth/dt
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#	- temp			OPTIONAL; used for backscatter calculation (i.e. not very important)
5
509cc9966b68 ======================================================================
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#	- %lat/%lon		OPTIONAL
0
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13
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# 2-BEAM SOLUTIONS
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#	- for beam-coordinate data, two separate two-beam solutions (w12 & w34) are calculated
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#	- discrepancies can be indicative of package wake effects (e.g. MIXET data)
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#	- for earth-coordinate data, w12 and w34 are simply copies of w
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0
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# NUMERICAL OPTIONS
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#	- the first option in the list cannot be numerical!
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#	- if need be, use -v 1 as a dummy option
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# ELAPSED TIMES
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#	- there are 2 different elapsed times used in this program:
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#		1) elapsed based on firstgoodens in the LADCP time series
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#		2) CTD elapsed time
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#	- CTD elapsed time does not have to start with zero!
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#	- do not use the Seabird elapsed field, which is only reported to
3365828b1004 after DIMES UK2
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#	  3 significant digits, causing significant jitter in dt; however,
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#	  at least up to 2010 Seabird simply calculates elapsed time by 
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#	  assuming a 24Hz sampling rate and no record drop; therefore,
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#	  it is best to calculate elapsed time as %RECNO/24
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#	- the elapsed field of the output is the elapsed time from the CTD
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#	  file; this is required in order to be able to compare the times
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#	  from the uplooker and downlooker-derived vertical velocity
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#	  profiles
11
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#	- the .TL files use the LADCP elapsed time in output; as a result,
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#	  the DL/UL .TL files have different time axes!
0
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#	- as a result, a profile only starts with elapsed==0 if the CTD
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#	  is turned on when the LADCP is already in the water
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13
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# BINNED-PROFILE OUTPUT NOTES
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#	- residuals are calculated with respect to down-/upcast medians
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#	- w12 and w34 2-beam solutions are reported without considering
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#	  -k (min samples)
2
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#	- equivalence, assuming -o 10:
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#		1) 004DL.prof dc_w depth
6
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#		2) bindata -Sdowncast:1 -Fw.median,depth -n 20 depth 10 004DL.w
2
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0
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# VELOCITY AMBIGUITY ERRORS
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#	- quite extensive tests with DIMES US2 station 146, which has a lot of
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#	  ambiguity velocity errors, reveal that -m 1 catches those errors
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#	  quite nicely
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#	- even when the errors are not filtered with -m 1, they do not
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#	  affect the w profiles, as long as the median bin values are used
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($WCALC) 	  = ($0                =~ m{^(.*)/[^/]*$});
10
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($ANTS) 	  = (`which ANTSlib`   =~ m{^(.*)/[^/]*$});
0
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($PERL_TOOLS) = (`which mkProfile` =~ m{^(.*)/[^/]*$});
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require "$ANTS/ants.pl";
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require "$ANTS/libstats.pl";
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require "$WCALC/edit_data.pl";
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require "$WCALC/time_series.pl";
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require "$WCALC/time_lag.pl";
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require "$WCALC/find_seabed.pl";
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require "$WCALC/svel_corrections.pl";
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require "$WCALC/acoustic_backscatter.pl";
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require "$WCALC/bottom_tracking.pl";
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require "$PERL_TOOLS/RDI_BB_Read.pl";
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require "$PERL_TOOLS/RDI_Coords.pl";
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5
509cc9966b68 ======================================================================
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use IO::Handle;
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6
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my($TINY) = 1e-16;
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4
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#------
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# Usage
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#------
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2
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@ARGS = @ARGV;														# save opts & arguments
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0
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$antsParseHeader = 0;
13
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&antsUsage('3:4a:b:c:e:g:h:i:k:m:n:o:p:qs:t:uv:w:x:',1,
0
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	'[-v)erbosity <level[1]>]',
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	'[-q)uick (no single-ping denoising)]',
13
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    '[require -4)-beam solutions] [apply beamvel-m)ask <file> if it exists]',
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	'[valid LADCP -b)ins <bin[2],bin[*]>',
0
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	'[-c)orrelation <min[70]>] [-t)ilt <max[10deg]> [-e)rr-vel <max[0.1m/s]>]',
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	'[-h water <depth>]',
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	'[max LADCP time-series -g)ap <length[60s]>]',
13
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	'[offset CTD -d)epth <by[0m]>]',
2
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	'[-i)nitial CTD time offset <guestimate> [-u)se as final]]',
13
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	'[calculate -n) <lags,lags[10,100]>] [lag -w)indow <sz,sz[240s,20s]>] [lag-p)iece <CTD_elapsed_min|+[,...]>]',
0
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	'[require top-3) lags to account for <frac[0.6]> of all]',
13
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	'[pressure-sensor -a)cceleration correction <residual/CTD_w_tt>]',
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	'[-o)utput bin <resolution[10m]>] [-k) require <min[20]> samples]',
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	'[e-x)ecute <perl-expr>]',
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	'<station-id> [run-label]');
0
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   239
2
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&antsUsageError() if ($opt_u && !defined($opt_i));
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&antsCardOpt(\$opt_s,0);											# skip # initial ensembles
13
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diff changeset
   243
$opt_p = '+' unless defined($opt_p);								# separate uc/dc time lagging
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diff changeset
   244
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diff changeset
   245
&antsFloatOpt(\$opt_a,1);											# pressure acceleration correction
2
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parents: 1
diff changeset
   246
4
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diff changeset
   247
$STN = &antsCardArg();												# station id
5
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diff changeset
   248
if (@ARGV) {														# run label
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diff changeset
   249
	$RUN = $ARGV[0];
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diff changeset
   250
	shift;
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parents: 4
diff changeset
   251
} else {
13
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diff changeset
   252
	$RUN = 'profiles';
5
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parents: 4
diff changeset
   253
}
0
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parents:
diff changeset
   254
4
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parents: 3
diff changeset
   255
#-----------------------------
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parents: 3
diff changeset
   256
# Handle Processing Parameters
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diff changeset
   257
#-----------------------------
0
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diff changeset
   258
13
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diff changeset
   259
require "$WCALC/defaults.pl";											# load default/option parameters
2788bf1bf1de after DIMES US5
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diff changeset
   260
require "$processing_param_file";										# load processing parameters
2788bf1bf1de after DIMES US5
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parents: 12
diff changeset
   261
eval($opt_x) if defined($opt_x);										# eval cmd-line expression to override anything
0
3365828b1004 after DIMES UK2
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parents:
diff changeset
   262
13
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parents: 12
diff changeset
   263
$RDI_Coords::minValidVels = 4 if ($opt_4);								# decode cmd-line arguments
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   264
($LADCP_firstBin,$LADCP_lastBin) = split(',',$opt_b);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   265
	croak("$0: cannot decode -b $opt_b\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   266
    	unless (numberp($LADCP_firstBin) &&
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   267
        	    ($LADCP_lastBin eq '*' || numberp($LADCP_lastBin)));
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   268
@number_of_timelag_windows = split(',',$opt_n);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   269
	croak("$0: cannot decode -n $opt_n\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   270
		unless numberp($number_of_timelag_windows[0]) && numberp($number_of_timelag_windows[1]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   271
@length_of_timelag_windows = split(',',$opt_w);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   272
	croak("$0: cannot decode -w $opt_w\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   273
		unless numberp($length_of_timelag_windows[0]) && numberp($length_of_timelag_windows[1]);
2788bf1bf1de after DIMES US5
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parents: 12
diff changeset
   274
2788bf1bf1de after DIMES US5
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parents: 12
diff changeset
   275
2788bf1bf1de after DIMES US5
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parents: 12
diff changeset
   276
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parents: 12
diff changeset
   277
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parents: 12
diff changeset
   278
croak("$0: \$out_basename undefined\n")									# all plotting routines use this
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   279
	unless defined($out_basename);
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   280
&antsAddParams('out_basename',$out_basename);
5
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parents: 4
diff changeset
   281
&antsAddParams('run_label',$RUN);
0
3365828b1004 after DIMES UK2
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parents:
diff changeset
   282
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
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parents: 3
diff changeset
   283
$out_w 	    	= ">$out_w" 		 unless ($out_w =~ /^$|^\s*\|/);	# make sure O_CREAT is set unless it's a pipe
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   284
$out_BR 	    = ">$out_BR" 		 unless ($out_BR =~ /^$|^\s*\|/);
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   285
$out_TL 	    = ">$out_TL" 		 unless ($out_TL =~ /^$|^\s*\|/);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   286
$out_LADCPtis  	= ">$out_LADCPtis"   unless ($out_LADCPtis =~ /^$|^\s*\|/);
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   287
$out_profile    = ">$out_profile" 	 unless ($out_profile =~ /^$|^\s*\|/);
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   288
$out_timeseries = ">$out_timeseries" unless ($out_timeseries =~ /^$|^\s*\|/);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   289
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   290
#----------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   291
# Screen Logging
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   292
#	- warning levels:
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   293
#		0 probably unimportant, e.g. nonsensical parameters that probably won't affect solution
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   294
#		1 may be somewhat important
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   295
#		2 important
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   296
#----------------------------------------------------------------------
3365828b1004 after DIMES UK2
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parents:
diff changeset
   297
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   298
open(LOGF,">$out_log") || croak("$out_log: $!\n")
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   299
	if defined($out_log);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   300
LOGF->autoflush(1);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   301
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   302
sub progress(@)
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   303
{
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   304
	printf(LOGF @_) if defined($out_log);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   305
	printf(STDERR @_) if ($opt_v > 1);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   306
}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   307
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   308
sub info(@)
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   309
{
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   310
	printf(LOGF "\t",@_) if defined($out_log);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   311
	print(STDERR ($opt_v > 1) ? "\t" : "$LADCP_file: ");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   312
	printf(STDERR @_)  if ($opt_v > 0);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   313
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   314
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   315
sub warning(@)
3365828b1004 after DIMES UK2
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parents:
diff changeset
   316
{
3365828b1004 after DIMES UK2
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parents:
diff changeset
   317
	my($lvl,@msg) = @_;
5
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parents: 4
diff changeset
   318
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   319
	if (defined($out_log)) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   320
		print(LOGF "\nWARNING (level $lvl): ");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   321
		printf(LOGF @msg);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   322
		print(LOGF "\n");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   323
	}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   324
	return if ($opt_v == 0);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   325
	print(STDERR "\n") if ($opt_v > 1);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   326
	print(STDERR "WARNING (level $lvl): ");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   327
	printf(STDERR @msg);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   328
	print(STDERR "\n") if ($opt_v > 1);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   329
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   330
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   331
sub debugmsg(@)
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   332
{ printf(STDERR @_) if ($opt_v > 2); }
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   333
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   334
#----------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   335
# Read LADCP data
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   336
#----------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   337
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   338
progress("Reading LADCP data from <$LADCP_file>...\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   339
readData($LADCP_file,\%LADCP);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   340
progress("\t%d ensembles\n",scalar(@{$LADCP{ENSEMBLE}}));
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   341
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   342
croak("$LADCP_file: not enough LADCP bins ($LADCP{N_BINS}) for choice of -r\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   343
	unless ($LADCP{N_BINS} >= $refLr_lastBin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   344
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   345
croak("$0: first reference-layer bin outside valid range\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   346
	unless ($refLr_firstBin>=1 && $refLr_firstBin<=$LADCP{N_BINS});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   347
croak("$0: last reference-layer bin outside valid range\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   348
	unless ($refLr_lastBin>=1 && $refLr_lastBin<=$LADCP{N_BINS});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   349
croak("$0: first reference-layer bin > last reference-layer bin\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   350
	unless ($refLr_firstBin <= $refLr_lastBin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   351
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   352
$LADCP_lastBin = $LADCP{N_BINS}-1
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   353
	if ($LADCP_lastBin eq '*');
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   354
croak("$0: first valid LADCP bin outside valid range\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   355
	unless ($LADCP_firstBin>=1 && $LADCP_firstBin<=$LADCP{N_BINS});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   356
croak("$0: last valid LADCP bin outside valid range\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   357
	unless ($LADCP_lastBin>=1 && $LADCP_lastBin<=$LADCP{N_BINS});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   358
croak("$0: first valid LADCP bin > last valid LADCP bin\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   359
	unless ($LADCP_firstBin <= $LADCP_lastBin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   360
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   361
warning(0,"first reference-layer bin < first valid LADCP bin\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   362
	unless ($refLr_firstBin >= $LADCP_firstBin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   363
warning(0,"last reference-layer bin > last valid LADCP bin\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   364
	unless ($refLr_lastBin <= $LADCP_lastBin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   365
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   366
warning(1,"if at all, bin 1 should not be used for short blank-after-transmit values\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   367
	if ($LADCP{BLANKING_DISTANCE}<$LADCP{BIN_LENGTH} && $refLr_firstBin==1);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   368
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   369
&antsAddParams('ADCP_bin_length',$LADCP{BIN_LENGTH},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   370
			   'ADCP_frequency',$LADCP{BEAM_FREQUENCY},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   371
			   'ADCP_blanking_distance',$LADCP{BLANKING_DISTANCE});
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   372
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   373
#------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   374
# Edit beam-velocity data
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   375
#	0) beam-vel mask on -m
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   376
#	1) correlation threshold
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   377
#------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   378
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   379
if ($LADCP{BEAM_COORDINATES}) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   380
	progress("Editing beam-velocity data...\n");
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   381
	
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   382
	if (defined($opt_m) && -r $opt_m) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   383
		progress("\tmasking beam velocities according to $opt_m:");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   384
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   385
		my($nee) = 0;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   386
		open(BVM,$opt_m) || die("$opt_m: $!\n");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   387
		while (<BVM>) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   388
			s/#.*//;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   389
			s/^\s*$//;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   390
			next if ($_ eq '');
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   391
			my($fe,$te,$db) = split;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   392
			die("$opt_m: cannot decode $_\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   393
				unless (numberp($fe) && numberp($te) && $te>=$fe && $db>=1 && $db<=4);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   394
			die("$0: assertion failed")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   395
				unless ($LADCP{ENSEMBLE}[$fe-1]->{NUMBER} == $fe &&
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   396
						$LADCP{ENSEMBLE}[$te-1]->{NUMBER} == $te);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   397
			for (my($ens)=$fe-1; $ens<=$te-1; $ens++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   398
				$nee++;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   399
				for (my($bin)=0; $bin<$LADCP{N_BINS}; $bin++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   400
					undef($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$db-1]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   401
				}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   402
			}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   403
		}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   404
		print(STDERR " $nee ensembles edited\n");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   405
		close(BVM);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   406
	}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   407
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   408
	$nvv = $cte = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   409
	for ($ens=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   410
		correctAttitude($ens,$pitch_bias,$roll_bias,$heading_bias);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   411
		$nvv += countValidBeamVels($ens);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   412
		$cte += editCorr($ens,$opt_c);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   413
#		$pte += editTilt($ens,$opt_t);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   414
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   415
	croak("$LADCP_file: no valid data\n") unless ($nvv > 0);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   416
	progress("\tcorrelation threshold (-c %d counts): %d velocites removed (%d%% of total)\n",$opt_c,$cte,round(100*$cte/$nvv));
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   417
#	progress("\tattitude threshold (-t %d deg): %d velocites removed (%d%% of total)\n",$opt_t,$pte,round(100*$pte/$nvv));
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   418
} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   419
	progress("Editing velocity data...\n");
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   420
	croak("$LADCP_file: cannot apply beamvel-mask $opt_m to earth-coordinate data\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   421
		if defined($opt_m);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   422
	$nvv = $cte = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   423
	for ($ens=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   424
		$nvv += countValidBeamVels($ens);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   425
		$cte += editCorr_Earthcoords($ens,$opt_c);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   426
#		$pte += editTilt($ens,$opt_t);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   427
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   428
	croak("$LADCP_file: no valid data\n") unless ($nvv > 0);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   429
	progress("\tcorrelation threshold (-c %d counts): %d velocites removed (%d%% of total)\n",$opt_c,$cte,round(100*$cte/$nvv));
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   430
#	progress("\tattitude threshold (-t %d deg): %d velocites removed (%d%% of total)\n",$opt_t,$pte,round(100*$pte/$nvv));
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   431
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   432
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   433
#-------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   434
# Calculate earth velocities
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   435
#	- this is done for all bins (not just valid ones), to allow
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   436
#	  useless possibility that invalid bins are used for reflr calcs
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   437
#	- also calculate separate beam-pair velocities
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   438
#	- the UNEDITED velocities are saved for the BT calculations
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   439
#	  (W is required, U & V are only used for stats that have not
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   440
#	  been very useful so far)
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   441
#-------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   442
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   443
if ($LADCP{BEAM_COORDINATES}) {
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   444
	my($dummy);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   445
	progress("Calculating earth-coordinate velocities...\n");
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   446
	progress("\tdiscarding velocities from beam $bad_beam\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   447
		if ($bad_beam);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   448
	$nvw = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   449
	for ($ens=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   450
		for (my($bin)=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   451
			if ($bad_beam) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   452
				undef($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][$bad_beam-1]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   453
				undef($LADCP{ENSEMBLE}[$ens]->{BT_VELOCITY}[$bin][$bad_beam-1]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   454
			}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   455
			($LADCP{ENSEMBLE}[$ens]->{U}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   456
			 $LADCP{ENSEMBLE}[$ens]->{V}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   457
			 $LADCP{ENSEMBLE}[$ens]->{W}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   458
			 $LADCP{ENSEMBLE}[$ens]->{ERRVEL}[$bin]) =
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   459
				velInstrumentToEarth(\%LADCP,$ens,
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   460
					velBeamToInstrument(\%LADCP,
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   461
										@{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]}));
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   462
			if (defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin])) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   463
				$per_bin_nsamp[$bin]++;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   464
				$nvw++;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   465
			}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   466
			$LADCP{ENSEMBLE}[$ens]->{GIMBAL_PITCH} =
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   467
			 	gimbal_pitch($LADCP{ENSEMBLE}[$ens]->{PITCH},$LADCP{ENSEMBLE}[$ens]->{ROLL});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   468
			$LADCP{ENSEMBLE}[$ens]->{U_UNEDITED}[$bin] = $LADCP{ENSEMBLE}[$ens]->{U}[$bin];
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   469
			$LADCP{ENSEMBLE}[$ens]->{V_UNEDITED}[$bin] = $LADCP{ENSEMBLE}[$ens]->{V}[$bin];
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   470
			$LADCP{ENSEMBLE}[$ens]->{W_UNEDITED}[$bin] = $LADCP{ENSEMBLE}[$ens]->{W}[$bin];
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   471
			
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   472
			($dummy,$LADCP{ENSEMBLE}[$ens]->{W12}[$bin],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   473
			 $dummy,$LADCP{ENSEMBLE}[$ens]->{W34}[$bin]) =
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   474
			 	velBeamToBPEarth(\%LADCP,$ens,@{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   475
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   476
	}
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   477
	progress("\t$nvw valid velocities in bins $LADCP_firstBin-$LADCP_lastBin\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   478
	progress("\t3-beam solutions : $RDI_Coords::threeBeam_1 " .
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   479
								  "$RDI_Coords::threeBeam_2 " .
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   480
								  "$RDI_Coords::threeBeam_3 " .
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   481
								  "$RDI_Coords::threeBeam_4\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   482
	    unless ($opt_4);
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   483
} else { # Earth Coordinates
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   484
	progress("Counting valid vertical velocities...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   485
	$nvw = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   486
	for ($ens=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   487
		for (my($bin)=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   488
			($LADCP{ENSEMBLE}[$ens]->{U}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   489
			 $LADCP{ENSEMBLE}[$ens]->{V}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   490
			 $LADCP{ENSEMBLE}[$ens]->{W}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   491
			 $LADCP{ENSEMBLE}[$ens]->{ERRVEL}[$bin]) = @{$LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin]};
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   492
			if (defined($LADCP{ENSEMBLE}[$ens]->{W}[$bin])) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   493
				$per_bin_nsamp[$bin]++;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   494
				$nvw++;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   495
			}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   496
			$LADCP{ENSEMBLE}[$ens]->{U_UNEDITED}[$bin] = $LADCP{ENSEMBLE}[$ens]->{U}[$bin];
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   497
			$LADCP{ENSEMBLE}[$ens]->{V_UNEDITED}[$bin] = $LADCP{ENSEMBLE}[$ens]->{V}[$bin];
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   498
			$LADCP{ENSEMBLE}[$ens]->{W_UNEDITED}[$bin] = $LADCP{ENSEMBLE}[$ens]->{W}[$bin];
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   499
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   500
			$LADCP{ENSEMBLE}[$ens]->{W12}[$bin] = $LADCP{ENSEMBLE}[$ens]->{W34}[$bin] = $LADCP{ENSEMBLE}[$ens]->{W}[$bin];
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   501
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   502
	}
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   503
	progress("\t$nvw valid velocities in bins $LADCP_firstBin-$LADCP_lastBin\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   504
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   505
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   506
croak("$LADCP_file: insufficient valid velocities\n") unless ($nvw > 1000);
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   507
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   508
#----------------------------------------------
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   509
# STEP: Edit earth-coordinate -velocity data
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   510
#	1) error-velocity threshold
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   511
#	2) vertical-velocity outliers
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   512
#	3) truncate range by deleting farthest valid velocities (disbled by default)
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   513
#----------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   514
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   515
progress("Editing earth-coordinate velocity data...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   516
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   517
$evrm = $trrm = $worm = 0;
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   518
for ($ens=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   519
	$evrm += editErrVel($ens,$opt_e);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   520
	$worm += editWOutliers($ens,$per_ens_outliers_mad_limit);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   521
	$trrm += editTruncRange($ens,$truncate_farthest_valid_bins) if ($truncate_farthest_valid_bins > 0);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   522
}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   523
progress("\terror-velocity threshold (-e %.2f m/s): %d velocites removed (%d%% of total in bins $LADCP_firstBin-$LADCP_lastBin)\n",
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   524
	$opt_e,$evrm,round(100*$evrm/$nvw));
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   525
progress("\tvertical-velocity outliers ($per_ens_outliers_mad_limit x mad): %d velocites removed (%d%% of total in bins $LADCP_firstBin-$LADCP_lastBin)\n",
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   526
	$worm,round(100*$worm/$nvw));
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   527
progress("\trange truncation (-z %d bins): %d velocites removed (%d%% of total in bins $LADCP_firstBin-$LADCP_lastBin)\n",
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   528
	$truncate_farthest_valid_bins,$trrm,round(100*$trrm/$nvw))
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   529
		if ($truncate_farthest_valid_bins > 0);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   530
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   531
#----------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   532
# Calculate LADCP time series
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   533
#----------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   534
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   535
progress("Calculating LADCP time-series...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   536
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   537
($firstGoodEns,$lastGoodEns,$LADCP_atbottom,$LADCP_w_gap_time) =
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   538
	calcLADCPts(\%LADCP,$opt_s,$refLr_firstBin,$refLr_lastBin,$opt_g);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   539
croak("$LADCP_file: no good ensembles\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   540
	unless defined($firstGoodEns) && ($lastGoodEns-$firstGoodEns > 0);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   541
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   542
my($cast_duration) = $LADCP{ENSEMBLE}[$lastGoodEns]->{ELAPSED} -
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   543
				     $LADCP{ENSEMBLE}[$firstGoodEns]->{ELAPSED};
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   544
croak("$0: implausibly short cast ($cast_duration seconds)\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   545
	unless ($cast_duration > 600);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   546
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   547
$LADCP{MEAN_DT} = $cast_duration / ($lastGoodEns-$firstGoodEns-1);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   548
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   549
progress("\tStart of cast     : %s (#%5d)\n",
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   550
					$LADCP{ENSEMBLE}[$firstGoodEns]->{TIME},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   551
					$LADCP{ENSEMBLE}[$firstGoodEns]->{NUMBER});
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   552
progress("\tBottom of cast    : %s (#%5d) @ dz=%6dm\n",
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   553
					$LADCP{ENSEMBLE}[$LADCP_atbottom]->{TIME},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   554
					$LADCP{ENSEMBLE}[$LADCP_atbottom]->{NUMBER},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   555
					$LADCP{ENSEMBLE}[$LADCP_atbottom]->{DEPTH});
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   556
progress("\tEnd of cast       : %s (#%5d) @ dz=%6dm\n",
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   557
					$LADCP{ENSEMBLE}[$lastGoodEns]->{TIME},
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   558
					$LADCP{ENSEMBLE}[$lastGoodEns]->{NUMBER},
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   559
					$LADCP{ENSEMBLE}[$lastGoodEns]->{DEPTH});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   560
progress("\tCast duration     : %.1f hours (pinging for %.1f hours)\n",
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   561
					$cast_duration / 3600,
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   562
					($LADCP{ENSEMBLE}[$#{$LADCP{ENSEMBLE}}]->{UNIX_TIME} -
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   563
						$LADCP{ENSEMBLE}[0]->{UNIX_TIME}) / 3600);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   564
progress("\tMean ping interval: %.1f seconds\n",$LADCP{MEAN_DT});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   565
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   566
if (defined($out_LADCPtis)) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   567
	progress("Writing LADCP-timeseries to <$out_LADCPtis>...\n");
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   568
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   569
	@antsNewLayout = ('ens','elapsed','reflr_w','reflr_w.stddev','reflr_w.nsamp','depth');
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   570
	open(STDOUT,"$out_LADCPtis") || croak("$out_LADCPtis: $!\n");
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   571
	for (my($ens)=$firstGoodEns; $ens<=$lastGoodEns; $ens++) {
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   572
		&antsOut($LADCP{ENSEMBLE}[$ens]->{NUMBER},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   573
				 $LADCP{ENSEMBLE}[$ens]->{ELAPSED},
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   574
				 $LADCP{ENSEMBLE}[$ens]->{REFLR_W},
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   575
				 $LADCP{ENSEMBLE}[$ens]->{REFLR_W_STDDEV},
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   576
				 $LADCP{ENSEMBLE}[$ens]->{REFLR_W_NSAMP},
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   577
				 $LADCP{ENSEMBLE}[$ens]->{DEPTH});
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   578
	}
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   579
	&antsOut('EOF'); open(STDOUT,">&2");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   580
}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   581
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   582
#----------------------------------------------------------------------
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   583
# More editing
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   584
#	- this requires ${first,last}GoodEns to be known
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
   585
#	- TILT field is set as a side-effect
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   586
#----------------------------------------------------------------------
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   587
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   588
progress("Editing additional earth-coordinate velocity data...\n");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   589
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   590
my($first_bad_bin);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   591
for (my($bin)=$LADCP_firstBin-1; $bin<$LADCP_lastBin-1; $bin++) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   592
	next unless ($per_bin_nsamp[$bin]/($lastGoodEns-$firstGoodEns) < $per_bin_valid_frac_lim);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   593
	$first_bad_bin = $bin;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   594
	last;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   595
}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   596
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   597
$fprm = $pte = 0;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   598
for ($ens=0; $ens<=$#{$LADCP{ENSEMBLE}}; $ens++) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   599
	$pte += editTilt($ens,$opt_t);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   600
	$fprm += editFarBins($ens,$first_bad_bin) if defined($first_bad_bin);
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   601
}
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   602
progress("\tattitude threshold (max_tilt = %d deg): %d velocites removed (%d%% of total)\n",
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   603
	$opt_t,$pte,round(100*$pte/$nvv));
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   604
progress("\tvelocities beyond bin $first_bad_bin (<%d%% valid values): %d velocites removed (%d%% of total in bins $LADCP_firstBin-$LADCP_lastBin)\n",
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   605
	round(100*$per_bin_valid_frac_lim),$fprm,round(100*$fprm/$nvw));
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   606
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   607
#--------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   608
# Read CTD data
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   609
#--------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   610
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   611
progress("Reading CTD data from <$CTD_file>...\n");
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   612
open(STDIN,$CTD_file) || croak("$CTD_file: $!\n");
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   613
croak("$CTD_file: no data\n") unless (&antsIn());
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   614
undef($antsOldHeaders);
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   615
($CTD_elapsed,$CTD_depth,$CTD_svel,$CTD_w) = &fnr('elapsed','depth','ss','w');
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   616
$CTD_temp = &fnrNoErr('temp');
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   617
&antsAddParams('lat',$P{lat}) if defined($P{lat});
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   618
&antsAddParams('lon',$P{lon}) if defined($P{lon});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   619
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   620
$CTD_maxdepth = -1;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   621
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   622
do {																		# read data
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   623
	croak("$0: cannot deal with non-numeric CTD elapsed time\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   624
		unless &antsNumbers($CTD_elapsed);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   625
	push(@{$CTD{ELAPSED}},$ants_[0][$CTD_elapsed]);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   626
	push(@{$CTD{DEPTH}},  $ants_[0][$CTD_depth]);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   627
	push(@{$CTD{SVEL}},   $ants_[0][$CTD_svel]);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   628
	push(@{$CTD{W}},      $ants_[0][$CTD_w]);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   629
	push(@{$CTD{TEMP}},	  $ants_[0][$CTD_temp]) if defined($CTD_temp);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   630
	if ($ants_[0][$CTD_depth] > $CTD_maxdepth) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   631
		$CTD_maxdepth = $ants_[0][$CTD_depth];
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   632
		$CTD_atbottom = $#{$CTD{DEPTH}};
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   633
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   634
} while (&antsIn());
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   635
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   636
$CTD{DT} = ($CTD{ELAPSED}[$#{$CTD{ELAPSED}}] - $CTD{ELAPSED}[0]) / $#{$CTD{ELAPSED}};
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   637
progress("\t%d scans at %.1fHz\n",scalar(@{$CTD{DEPTH}}),1/$CTD{DT});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   638
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   639
$CTD{W_t}[0]  = $CTD{W_t} [@{$CTD{ELAPSED}}] = nan;							# calculate w-derivatives
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   640
$CTD{W_tt}[0] = $CTD{W_tt}[@{$CTD{ELAPSED}}] = nan;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   641
for (my($s)=1; $s<@{$CTD{ELAPSED}}-1; $s++) {								# centered differences for both
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   642
	$CTD{W_t} [$s] = ($CTD{W}[$s+1] - $CTD{W}[$s-1]) / (2*$CTD{DT});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   643
	$CTD{W_tt}[$s] = ($CTD{W}[$s+1] + $CTD{W}[$s-1] - 2*$CTD{W}[$s]) / $CTD{DT}**2;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   644
}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   645
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   646
croak("$0: CTD start depth must be numeric\n")
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   647
	unless numberp($CTD{DEPTH}[0]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   648
if (($CTD{DEPTH}[0] < -$opt_d) && !defined($opt_d)) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   649
	$opt_d = -1 * round($CTD{DEPTH}[0]);
12
2adcd220b9b4 before attempting to implement piece-wise time-lagging
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 11
diff changeset
   650
}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   651
if ($opt_d > 0) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   652
	progress("\tadding $opt_d dbar offset to pressure data\n");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   653
	for (my($i)=0; $i<@{$CTD{DEPTH}}; $i++) { $CTD{DEPTH}[$i] += $opt_d; }
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   654
	$CTD_maxdepth += $opt_d;
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   655
}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   656
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   657
progress("\tstart depth = %.1fm\n",$CTD{DEPTH}[0]);
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   658
progress("\tmax depth   = %dm (# $CTD_atbottom)\n",$CTD_maxdepth);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   659
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   660
#--------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   661
# Construct sound-speed correction profile from CTD 1Hz downcast data
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   662
#	very simple algorithm that stores the last value found
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   663
#	in each 1m bin
16
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   664
# For PPI filtering, a sound speed profile without gaps is required.
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   665
#--------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   666
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   667
progress("Constructing sound-speed correction profile\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   668
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   669
my($scans_per_sec) = int(1/$CTD{DT}+0.5);
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   670
my($min_depth) = 9e99;
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   671
for (my($s)=0; $s<=$CTD_atbottom; $s+=$scans_per_sec) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   672
	next unless ($CTD{DEPTH}[$s] >= 0 && numberp($CTD{SVEL}[$s]));
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   673
	$min_depth = $s if ($s < $min_depth);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   674
	$sVelProf[int($CTD{DEPTH}[$s])] = $CTD{SVEL}[$s];
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   675
}
16
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   676
while ($min_depth > 0) {													# fill surface gap
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   677
	$sVelProf[$min_depth-1] = $sVelProf[$min_depth];
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   678
	$min_depth--;
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   679
}
16
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   680
for (my($d)=$min_depth+1; $d<=$#sVelProf; $d++) {							# fill interior gaps
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   681
	$sVelProf[$d] = $sVelProf[$d-1]
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   682
		unless defined($sVelProf[$d]);
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   683
}
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   684
	
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   685
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   686
#-------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   687
# Determine time lag
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   688
#-------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   689
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   690
if (defined($opt_i)) {
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   691
	progress("Setting initial time lag...\n");
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   692
	$CTD{TIME_LAG} = $opt_i;
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   693
	progress("\t-i => elapsed(CTD) ~ elapsed(LADCP) + %.1fs\n",$CTD{TIME_LAG});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   694
} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   695
	progress("Guestimating time lag...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   696
	
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   697
	my($CTD_10pct_down) = 0;
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   698
	my($LADCP_10pct_down) = $firstGoodEns;
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   699
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   700
	$CTD_10pct_down++
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   701
		until ($CTD{DEPTH}[$CTD_10pct_down]-$CTD{DEPTH}[0] >= 0.1*($CTD_maxdepth-$CTD{DEPTH}[0]));
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   702
	$LADCP_10pct_down++
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   703
		until ($LADCP{ENSEMBLE}[$LADCP_10pct_down]->{DEPTH} >= 0.1*$LADCP{ENSEMBLE}[$LADCP_atbottom]->{DEPTH});
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   704
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   705
	$CTD{TIME_LAG} =
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   706
		$CTD{ELAPSED}[$CTD_10pct_down] - $LADCP{ENSEMBLE}[$LADCP_10pct_down]->{ELAPSED};
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   707
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   708
	progress("\telapsed(dz(CTD)=%.1fm) ~ elapsed(dz(LADCP)=%.1fm) + %.1fs\n",
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   709
	    $CTD{DEPTH}[$CTD_10pct_down]-$CTD{DEPTH}[0],$LADCP{ENSEMBLE}[$LADCP_10pct_down]->{DEPTH},$CTD{TIME_LAG});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   710
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   711
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   712
if ($opt_u) {
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   713
	progress("\tskipping time lagging (-u)\n");
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   714
} else {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   715
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   716
	#------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   717
	# stage 1: 1Hz; full cast
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   718
	#------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   719
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   720
	$CTD{TIME_LAG} =														
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   721
		calc_lag($number_of_timelag_windows[0],$length_of_timelag_windows[0],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   722
				 int(1/$CTD{DT}+0.5),$firstGoodEns,$lastGoodEns);
11
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
   723
	croak("$0: Cannot proceed without valid lag!\n") unless defined($CTD{TIME_LAG});
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   724
	progress("\telapsed(CTD) ~ elapsed(LADCP) + %.2fs\n",$CTD{TIME_LAG});
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   725
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   726
	#---------------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   727
	# stage 2: piece-wise time lagging
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   728
	#---------------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   729
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   730
	my(@splits);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   731
	push(@splits,$firstGoodEns);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   732
	foreach my $s (split(/,/,$opt_p)) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   733
		if ($s eq '+') {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   734
			push(@splits,$LADCP_atbottom);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   735
		} elsif (numberp($s)) {												# find ens for given LADCP elapsed time in min
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   736
			my($ela) = $s*60;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   737
			my($ens) = $firstGoodEns + round($ela / $LADCP{MEAN_DT});		# first, guess
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   738
			while ($LADCP{ENSEMBLE}[$ens]->{ELAPSED} > $ela) { $ens--; }	# then, correct
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   739
			while ($LADCP{ENSEMBLE}[$ens]->{ELAPSED} < $ela) { $ens++; }
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   740
			push(@splits,$ens);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   741
		} else {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   742
			warning(2,"ignoring non-numeric -p argument %s",$s);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   743
		}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   744
    }
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   745
	push(@splits,$lastGoodEns);
11
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
   746
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   747
	my($valid_lag);															# determine piece-wise lags
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   748
	while (@splits > 1) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   749
		push(@CTD_tl_fromEns,$splits[0]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   750
		push(@CTD_tl_toEns,$splits[1]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   751
		my($lag) = calc_lag($number_of_timelag_windows[1],$length_of_timelag_windows[1],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   752
							1,$splits[0],$splits[1]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   753
		debugmsg("lag($splits[0],$splits[1]) = $lag\n");									
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   754
		if (defined($lag)) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   755
			progress("\tcast-piece: elapsed(CTD) = elapsed(LADCP) + %.2fs\n",$lag);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   756
			push(@CTD_time_lag,$lag);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   757
			$valid_lag = $#CTD_time_lag;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   758
		} else {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   759
			progress("\tcast-piece: time-lagging failed\n");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   760
			push(@CTD_time_lag,nan);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   761
		}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   762
		shift(@splits);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   763
	}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   764
			
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   765
	croak("$0: Cannot proceed without at least one lag!\n")					# fill failed lag with surrounding data
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   766
		unless defined($valid_lag);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   767
	while ($valid_lag < $#CTD_time_lag) {									# forward
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   768
		$CTD_time_lag[$valid_lag+1] = $CTD_time_lag[$valid_lag];
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   769
		$valid_lag++;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   770
	}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   771
	while ($valid_lag > 0) {												# backward
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   772
		$CTD_time_lag[$valid_lag-1] = $CTD_time_lag[$valid_lag]
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   773
			unless (numberp($CTD_time_lag[$valid_lag-1]));
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   774
		$valid_lag--;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   775
	}
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   776
}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   777
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   778
&antsAddParams('CTD_time_lags',"@CTD_time_lag");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   779
undef($CTD{TIME_LAG}); 														# to avoid confusion, clear old 1Hz-based lag
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   780
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   781
#------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   782
# Merge CTD with LADCP data
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   783
#	- after this step, reflr w is sound-speed corrected!!!
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   784
#------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   785
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   786
progress("Merging CTD with LADCP data...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   787
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   788
my($cli) = 0;																	# current-lag index
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   789
my($lag) = $CTD_time_lag[$cli];													# current lag
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   790
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   791
for (my($skipped)=0,my($ens)=$firstGoodEns; $ens<=$lastGoodEns; $ens++) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   792
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   793
	if ($ens > $CTD_tl_toEns[$cli]) {											# use correct lag piece
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   794
		$cli++;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   795
		die("assertion failed!\n\ttest: \$cli(=$cli) <= \$#CTD_time_lag\n")
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   796
			unless ($cli <= $#CTD_time_lag);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   797
		$lag = $CTD_time_lag[$cli];
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   798
	}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   799
	
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   800
	my($scan) = 
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   801
		int(($LADCP{ENSEMBLE}[$ens]->{ELAPSED} + $lag - $CTD{ELAPSED}[0]) / $CTD{DT} + 0.5);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   802
	if ($scan <= 0) {	# NB: must be <=, rather than <, or assertion below sometimes fails
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   803
		$skipped++;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   804
		$firstGoodEns = $ens+1;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   805
		next;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   806
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   807
	if ($skipped > 0) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   808
		$firstGoodEns++,$skipped++,next											# in gap
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   809
			unless defined($LADCP{ENSEMBLE}[$firstGoodEns]->{REFLR_W});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   810
		info("$skipped initial LADCP ensembles skipped because CTD data begin with LADCP in water\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   811
		$skipped = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   812
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   813
	if ($scan > $#{$CTD{ELAPSED}}) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   814
		while (!defined($LADCP{ENSEMBLE}[$ens-1]->{REFLR_W})) { $ens--; }		# in gap
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   815
		info(sprintf("%d final LADCP ensembles skipped because CTD data end with LADCP in water\n",
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   816
			$lastGoodEns-$ens+1));
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   817
		$lastGoodEns = $ens-1;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   818
		last;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   819
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   820
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   821
	$LADCP{ENSEMBLE}[$ens]->{CTD_ELAPSED} = $CTD{ELAPSED}[$scan];		# elapsed field for output
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   822
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   823
	if (defined($LADCP{ENSEMBLE}[$ens]->{REFLR_W})						# not a gap
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   824
			&& numberp($CTD{DEPTH}[$scan])) {
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   825
		$LADCP{ENSEMBLE}[$ens]->{REFLR_W_NOSSCORR} = $LADCP{ENSEMBLE}[$ens]->{REFLR_W};				
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
   826
	    $LADCP{ENSEMBLE}[$ens]->{REFLR_W} *= $CTD{SVEL}[$scan]/1500; 	# correct for sound-speed variations at source
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   827
		croak(sprintf("\n$0: negative depth (%.1fm) in CTD file at elapsed(CTD) = %.1fs (use -d?)\n",
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   828
			$CTD{DEPTH}[$scan],$CTD{ELAPSED}[$scan]))
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   829
				unless ($CTD{DEPTH}[$scan] >= 0);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   830
		$LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH} = $CTD{DEPTH}[$scan];
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   831
		$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN} = $scan;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   832
		my($reflr_ocean_w) = $LADCP{ENSEMBLE}[$ens]->{REFLR_W} - $CTD{W}[$scan];
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   833
		if (abs($reflr_ocean_w) <= $w_max_lim) {
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   834
			$sumWsq += &SQR($reflr_ocean_w);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   835
			$nWsq++;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   836
			if ($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH} > 100 &&
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   837
				$LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH} < $LADCP{ENSEMBLE}[$LADCP_atbottom]->{CTD_DEPTH}-100) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   838
					$sumWsqI += &SQR($reflr_ocean_w);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   839
					$nWsqI++;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   840
	        }
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   841
	    } else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   842
	    	undef($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});					# DON'T USE THIS ENSEMBLE LATER
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   843
	    }
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   844
	} else{
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   845
	    undef($LADCP{ENSEMBLE}[$ens]->{REFLR_W});						# don't output in time-series file
10
7e76fdef8953 version prior to carrying out separate dc-/uc- time lagging
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 6
diff changeset
   846
	    undef($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});						# old DEPTH from calcLADCPts() must be removed
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   847
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   848
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   849
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   850
if ($nWsq > 0 && $nWsqI > 0) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   851
	&antsAddParams('rms_w_reflr_err',sqrt($sumWsq/$nWsq),'rms_w_reflr_err_interior',sqrt($sumWsqI/$nWsqI));
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   852
	progress("\t%.2f cm/s rms reference-layer w_ocean, %.2f cm/s away from boundaries\n",
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   853
						100*sqrt($sumWsq/$nWsq),100*sqrt($sumWsqI/$nWsqI));
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   854
	warning(0,"%.2f cm/s reference-layer w_ocean away from boundaries\n",100*sqrt($sumWsqI/$nWsqI))
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   855
		if (sqrt($sumWsqI/$nWsqI) > 0.05);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   856
#	croak("$0: rms reference-layer w_ocean is too large\n")
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
   857
#		unless (sqrt($sumWsqI/$nWsqI) < 0.07);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   858
} elsif ($nWsq > 0) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   859
	&antsAddParams('rms_w_reflr_err',sqrt($sumWsq/$nWsq),'rms_w_reflr_err_interior',nan);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   860
	progress("\t%.2f cm/s rms reference-layer w_ocean\n",100*sqrt($sumWsq/$nWsq));
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   861
} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   862
	croak("$0: no valid vertical velocities\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   863
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   864
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   865
#----------------------------------------------------------------------
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   866
# Calculate Volume Scattering Coefficients
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   867
#----------------------------------------------------------------------
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   868
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   869
progress("Calculating volume-scattering coefficients...\n");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   870
calc_backscatter_profs($firstGoodEns,$lastGoodEns);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
   871
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   872
#----------------------------------------------------------------------------
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   873
# Edit data
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   874
#	1) contaminated by sidelobe reflection from seabed and sea surface
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   875
#	2) PPI 
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   876
#----------------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   877
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   878
if ($LADCP{ENSEMBLE}[$LADCP_atbottom]->{XDUCER_FACING_DOWN}) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   879
	&antsAddParams('ADCP_orientation','downlooker');
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   880
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   881
	if (numberp($opt_h)) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   882
		progress("Setting water depth (-h)\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   883
		$water_depth = $opt_h;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   884
		$sig_water_depth = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   885
	} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   886
		progress("Finding seabed...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   887
		($water_depth,$sig_water_depth) =
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   888
			find_backscatter_seabed($LADCP{ENSEMBLE}[$LADCP_atbottom]->{CTD_DEPTH});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   889
		($water_depth_BT,$sig_water_depth_BT) =
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   890
			find_seabed(\%LADCP,$LADCP_atbottom,$LADCP{BEAM_COORDINATES});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   891
		if (defined($water_depth_BT)) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   892
			my($dd) = abs($water_depth_BT - $water_depth);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   893
			warning(2,sprintf("Large RDI vs. own water-depth difference (%.1fm)\n",$dd))
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   894
				if ($dd > 5);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   895
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   896
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   897
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   898
	&antsAddParams('water_depth',$water_depth,'water_depth.sig',$sig_water_depth);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   899
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   900
	if (defined($water_depth)) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   901
		if (defined($water_depth_BT)) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   902
			progress("\t%.1f(%.1f) m water depth (%.1f(%.1f)m from BT)\n",
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   903
				$water_depth,$sig_water_depth,$water_depth_BT,$sig_water_depth_BT);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   904
		} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   905
			progress("\t%.1f(%.1f) m water depth\n",$water_depth,$sig_water_depth);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   906
		}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   907
		warning(1,sprintf("large uncertainty in water-depth estimation (%.1fm)\n",$sig_water_depth))
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   908
			if ($sig_water_depth > $LADCP{BIN_LENGTH});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   909
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   910
		progress("Editing data to remove sidelobe interference from seabed...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   911
		($nvrm,$nerm) = editSideLobes($firstGoodEns,$lastGoodEns,$water_depth);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   912
		progress("\t$nvrm velocities from $nerm ensembles removed\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   913
16
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   914
		if ($PPI_editing) {
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   915
			progress("Editing data to remove PPI from seabed...\n");
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   916
			  progress("\tConstructing depth-average soundspeed profile...\n");
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   917
			  my($dz) = $water_depth - $#sVelProf;							# $#sVelProf = max_depth(profile) in meters
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   918
			  my($sum) = $dz * $sVelProf[$#sVelProf];
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   919
			  $DASSprof[$#sVelProf] = $sum/$dz;
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   920
			  for (my($d)=$#sVelProf-1; $d>=0; $d--) {
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   921
			  	$sum += $sVelProf[$d];
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   922
			  	$dz++;
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   923
				$DASSprof[$d] = $sum/$dz;
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   924
			  }
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   925
			($nvrm,$nerm) = editPPI($firstGoodEns,$lastGoodEns,$water_depth);
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   926
	        progress("\t$nvrm velocities from $nerm ensembles removed\n");
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   927
	    }
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   928
	} else {
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   929
		info("no seabed found in backscatter profiles --- cannot edit sidelobe or PPI\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   930
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   931
	
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   932
} else {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   933
	&antsAddParams('ADCP_orientation','uplooker');
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   934
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   935
	progress("Editing data to remove sidelobe interference from sea surface...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   936
	($nvrm,$nerm) = editSideLobes($firstGoodEns,$lastGoodEns,undef);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   937
	progress("\t$nvrm velocities from $nerm ensembles removed\n");
15
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 13
diff changeset
   938
16
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   939
	if ($PPI_editing) {
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   940
		progress("Editing data to remove PPI from sea surface...\n");
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   941
		  progress("\tConstructing depth-average soundspeed profile...\n");
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   942
		  $DASSprof[0] = my($sum) = 0;
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   943
		  for (my($d)=1; $d<=$#sVelProf; $d++) {
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   944
		  	$sum += $sVelProf[$d];
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   945
			$DASSprof[$d] = $sum/$d;
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   946
		  }
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   947
		($nvrm,$nerm) = editPPI($firstGoodEns,$lastGoodEns,undef);
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   948
	    progress("\t$nvrm velocities from $nerm ensembles removed\n");
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
   949
	}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   950
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   951
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   952
#----------------------------------------------------------------------
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   953
# Data Editing after LADCP and CTD data have been merged
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   954
#	1) surface layer editing
10
7e76fdef8953 version prior to carrying out separate dc-/uc- time lagging
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 6
diff changeset
   955
#	2) user-supplied $edit_data_hook
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   956
#----------------------------------------------------------------------
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   957
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   958
progress("Removing data from instrument at surface...\n");
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   959
$nerm = editSurfLayer($firstGoodEns,$lastGoodEns,$surface_layer_depth);
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   960
progress("\t$nerm ensembles removed\n");
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   961
11
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
   962
if (defined($post_merge_hook)) {
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
   963
	progress("Executing user-supplied \$post_merge_hook...\n");
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
   964
	&{$post_merge_hook}($firstGoodEns,$lastGoodEns);
10
7e76fdef8953 version prior to carrying out separate dc-/uc- time lagging
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 6
diff changeset
   965
}
7e76fdef8953 version prior to carrying out separate dc-/uc- time lagging
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 6
diff changeset
   966
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   967
#----------------------------------------------------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   968
# apply pressure-sensor acceleration correction (-a)
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   969
#	- valid, but useless except for troubleshooting data sets (e.g. DIMES UK2)
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   970
#	- useless, because ping-coherent error removal below does same job but better
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   971
#	- it does not make sense to to use this with ping-coherent error removal enabled
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   972
#----------------------------------------------------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   973
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   974
if ($opt_a != 1) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   975
	progress("Applying pressure-sensor acceleration correction...\n");
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   976
	for ($ens=$firstGoodEns; $ens<=$lastGoodEns; $ens++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   977
		next unless numberp($CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   978
		my($acorr) = $opt_a * $CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}];
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   979
		if (numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH})) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   980
			for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   981
				next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   982
				$LADCP{ENSEMBLE}[$ens]->{W}[$bin] -= $acorr;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   983
	        }
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   984
	    }
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   985
		if (numberp($LADCP{ENSEMBLE}[$ens]->{REFLR_W})) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   986
			$LADCP{ENSEMBLE}[$ens]->{REFLR_W} -= $acorr;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   987
		}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   988
	}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   989
}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
   990
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   991
#---------------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   992
# Depth-bin LADCP velocity data
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   993
#
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   994
# NOTES:
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   995
#	1) ensemble and bin numbers are saved for maximum flexibility
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   996
#	2) only ensemble/bins with valid vertical velocities are saved
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
   997
#	3) applying the full soundspeed correction to w is pointless in
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   998
#	   practice, but hey!, CPU cycles are cheap; [in a cast in the Gulf of Mexico
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
   999
#	   which has fairly pronounce soundspeed gradients, the max value of Kn
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1000
#	   is 1.00004160558372, which gives rise to a correction of less than 0.2mm/s
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1001
#	   at a winch+wave speed of 3m/s....]
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1002
#	4) as far as I can tell, the soundspeed correction for bin length also
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1003
#	   has only a minute effect
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1004
#---------------------------------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1005
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1006
progress("Creating binned profiles at ${opt_o}m resolution...\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1007
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1008
my($min_depth) = 9e99;
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1009
my($max_depth) = 0;
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1010
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1011
progress("\tdowncast...\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1012
for ($ens=$firstGoodEns; $ens<$LADCP_atbottom; $ens++) {						# downcast
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1013
	unless (numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH})) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1014
		$firstGoodEns++ if ($ens == $firstGoodEns);								# start has been edited away
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1015
		next;
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1016
	}
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1017
	my(@bindepth) = calc_binDepths($ens);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1018
	for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1019
		next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1020
		$min_depth = $bindepth[$bin] if ($bindepth[$bin] < $min_depth);
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1021
		$max_depth = $bindepth[$bin] if ($bindepth[$bin] > $max_depth);
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1022
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] =
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1023
			sscorr_w($LADCP{ENSEMBLE}[$ens]->{W}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1024
					 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1025
					 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1026
					 $bindepth[$bin]);
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1027
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin] =
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1028
			sscorr_w($LADCP{ENSEMBLE}[$ens]->{W12}[$bin],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1029
					 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1030
					 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1031
					 $bindepth[$bin])
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1032
				if numberp($LADCP{ENSEMBLE}[$ens]->{W12}[$bin]);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1033
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin] =
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1034
			sscorr_w($LADCP{ENSEMBLE}[$ens]->{W34}[$bin],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1035
					 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1036
					 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1037
					 $bindepth[$bin])
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1038
				if numberp($LADCP{ENSEMBLE}[$ens]->{W34}[$bin]);
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1039
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_W}[$bin] =
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1040
			$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] + $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}];
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1041
		my($bi) = $bindepth[$bin]/$opt_o;
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1042
		push(@{$DNCAST{ENSEMBLE}[$bi]},$ens);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1043
		push(@{$DNCAST{ELAPSED}[$bi]},$CTD{ELAPSED}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1044
		push(@{$DNCAST{CTD_W}[$bi]},$CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1045
		push(@{$DNCAST{CTD_W_tt}[$bi]},$CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1046
		push(@{$DNCAST{BIN}[$bi]},$bin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1047
		push(@{$DNCAST{DEPTH}[$bi]},$bindepth[$bin]);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1048
		push(@{$DNCAST{W}[$bi]},$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1049
		push(@{$DNCAST{W12}[$bi]},$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1050
		push(@{$DNCAST{W34}[$bi]},$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin]);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1051
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1052
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1053
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1054
for (my($bi)=0; $bi<=$#{$DNCAST{ENSEMBLE}}; $bi++) {							# bin data into profile
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1055
	$DNCAST{MEAN_DEPTH}[$bi]  	= avg(@{$DNCAST{DEPTH}[$bi]});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1056
	$DNCAST{MEAN_ELAPSED}[$bi]	= avg(@{$DNCAST{ELAPSED}[$bi]});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1057
	$DNCAST{MEDIAN_W}[$bi] 	  	= median(@{$DNCAST{W}[$bi]});
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1058
	$DNCAST{MEDIAN_W12}[$bi]  	= median(@{$DNCAST{W12}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1059
	$DNCAST{MEDIAN_W34}[$bi]  	= median(@{$DNCAST{W34}[$bi]});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1060
	$DNCAST{MAD_W}[$bi]		  	= mad2($DNCAST{MEDIAN_W}[$bi],@{$DNCAST{W}[$bi]});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1061
	$DNCAST{N_SAMP}[$bi]		= @{$DNCAST{W}[$bi]};
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1062
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1063
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1064
progress("\tupcast...\n");														# upcast
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1065
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1066
my($realLastGoodEns);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1067
for ($ens=$LADCP_atbottom; $ens<=$lastGoodEns; $ens++) {		
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1068
	next unless numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1069
	$realLastGoodEns = $ens;
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1070
	my(@bindepth) = calc_binDepths($ens);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1071
	for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1072
		next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1073
		$min_depth = $bindepth[$bin] if ($bindepth[$bin] < $min_depth);
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1074
		$max_depth = $bindepth[$bin] if ($bindepth[$bin] > $max_depth);
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1075
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] =
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1076
			sscorr_w($LADCP{ENSEMBLE}[$ens]->{W}[$bin],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1077
					 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1078
					 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1079
					 $bindepth[$bin]);
6
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1080
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin] =
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1081
			sscorr_w($LADCP{ENSEMBLE}[$ens]->{W12}[$bin],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1082
					 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1083
					 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1084
					 $bindepth[$bin])
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1085
				if numberp($LADCP{ENSEMBLE}[$ens]->{W12}[$bin]);
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1086
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin] =
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1087
			sscorr_w($LADCP{ENSEMBLE}[$ens]->{W34}[$bin],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1088
					 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1089
					 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1090
					 $bindepth[$bin])
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 5
diff changeset
  1091
				if numberp($LADCP{ENSEMBLE}[$ens]->{W34}[$bin]);
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1092
		$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_W}[$bin] =
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1093
			$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] + $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}];
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1094
		my($bi) = $bindepth[$bin]/$opt_o;
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1095
		push(@{$UPCAST{ENSEMBLE}[$bi]},$ens);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1096
		push(@{$UPCAST{ELAPSED}[$bi]},$CTD{ELAPSED}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1097
		push(@{$UPCAST{CTD_W}[$bi]},$CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1098
		push(@{$UPCAST{CTD_W_tt}[$bi]},$CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1099
		push(@{$UPCAST{BIN}[$bi]},$bin);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1100
		push(@{$UPCAST{DEPTH}[$bi]},$bindepth[$bin]);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1101
		push(@{$UPCAST{W}[$bi]},$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1102
		push(@{$UPCAST{W12}[$bi]},$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1103
		push(@{$UPCAST{W34}[$bi]},$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin]);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1104
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1105
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1106
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1107
for (my($bi)=0; $bi<=$#{$UPCAST{ENSEMBLE}}; $bi++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1108
	$UPCAST{MEAN_DEPTH}[$bi]  	= avg(@{$UPCAST{DEPTH}[$bi]});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1109
	$UPCAST{MEAN_ELAPSED}[$bi]	= avg(@{$UPCAST{ELAPSED}[$bi]});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1110
	$UPCAST{MEDIAN_W}[$bi] 	  	= median(@{$UPCAST{W}[$bi]});
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1111
	$UPCAST{MEDIAN_W12}[$bi]  	= median(@{$UPCAST{W12}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1112
	$UPCAST{MEDIAN_W34}[$bi]  	= median(@{$UPCAST{W34}[$bi]});
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1113
	$UPCAST{MAD_W}[$bi]		  	= mad2($UPCAST{MEDIAN_W}[$bi],@{$UPCAST{W}[$bi]});
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1114
	$UPCAST{N_SAMP}[$bi]		= @{$UPCAST{W}[$bi]};
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1115
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1116
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1117
&antsAddParams('min_depth',$min_depth,'max_depth',$max_depth,					# plot range limits
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1118
			   'min_ens',$LADCP{ENSEMBLE}[$firstGoodEns]->{NUMBER},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1119
			   'max_ens',$LADCP{ENSEMBLE}[$realLastGoodEns]->{NUMBER},
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1120
			   'min_elapsed',$LADCP{ENSEMBLE}[$firstGoodEns]->{CTD_ELAPSED},
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1121
			   'max_elapsed',$LADCP{ENSEMBLE}[$realLastGoodEns]->{CTD_ELAPSED});
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1122
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1123
#------------------------------------------------------------------------------------------------------
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1124
# remove ping-coherent errors
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1125
#	- error sources:
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1126
#		1) acceleration-dependence of Paroscientific pressure measurements; O(10cm/s) [IWISE 28]
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1127
#		2) residual CTD/LADCP mismatch errors; O(1cm/s) [Thurnherr, CWTMC 2011]
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1128
#		3) ADCP short-term variability; O(1cm/s) for vertical?
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1129
#	- two steps:
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1130
#		- remove ensemble-median residual from all ocean vertical velocities
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1131
#		- re-bin profiles
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1132
#		- calculate new residuals
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1133
#	- improves solution but can introduce errors in ensembles with strong outliers => median instead of
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1134
#	  mean, and outlier filter above
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1135
#------------------------------------------------------------------------------------------------------
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1136
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1137
unless ($opt_q) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1138
	progress("Removing ping-coherent errors...\n");
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1139
	
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1140
	for ($ens=$firstGoodEns; $ens<=$lastGoodEns; $ens++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1141
		next unless numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
11
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
  1142
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1143
		my(@residuals) = ();												# calc median of residuals
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1144
		my(@bindepth) = calc_binDepths($ens);
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1145
		for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1146
			next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1147
			my($bi) = $bindepth[$bin]/$opt_o;
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1148
			push(@residuals,
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1149
				$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] -
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1150
					(($ens < $LADCP_atbottom) ? $DNCAST{MEDIAN_W}[$bi]
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1151
											  : $UPCAST{MEDIAN_W}[$bi]));
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1152
		}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1153
		$LADCP{ENSEMBLE}[$ens]->{MEDIAN_RESIDUAL_W} = median(@residuals);	# NB: can be nan!
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1154
		
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1155
		for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {		# remove from ocean velocities
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1156
			next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);			# also ensures that MEDIAN_RESIDUAL_W is not nan
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1157
			$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] -=
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1158
				$LADCP{ENSEMBLE}[$ens]->{MEDIAN_RESIDUAL_W};
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1159
			$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin] -=
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1160
				$LADCP{ENSEMBLE}[$ens]->{MEDIAN_RESIDUAL_W}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1161
					if numberp($LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1162
			$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin] -=
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1163
				$LADCP{ENSEMBLE}[$ens]->{MEDIAN_RESIDUAL_W}
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1164
					if numberp($LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin]);
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1165
		}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1166
		
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1167
		$LADCP{ENSEMBLE}[$ens]->{REFLR_W} -=								# reflr_ocean_w is calculated below
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1168
			$LADCP{ENSEMBLE}[$ens]->{MEDIAN_RESIDUAL_W}						# NB: this can be set to nan here
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1169
				if numberp($LADCP{ENSEMBLE}[$ens]->{REFLR_W})
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1170
    }
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1171
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1172
	#------------------------------------------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1173
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1174
    progress("\tre-binning profile data...\n");
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1175
    
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1176
	for (my($bi)=0; $bi<=$#{$DNCAST{ENSEMBLE}}; $bi++) {					# bin data
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1177
		for (my($i)=0; $i<@{$DNCAST{W}[$bi]}; $i++) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1178
			$DNCAST{W}  [$bi][$i] -= $LADCP{ENSEMBLE}[$DNCAST{ENSEMBLE}[$bi][$i]]->{MEDIAN_RESIDUAL_W};
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1179
			$DNCAST{W12}[$bi][$i] -= $LADCP{ENSEMBLE}[$DNCAST{ENSEMBLE}[$bi][$i]]->{MEDIAN_RESIDUAL_W};
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1180
			$DNCAST{W34}[$bi][$i] -= $LADCP{ENSEMBLE}[$DNCAST{ENSEMBLE}[$bi][$i]]->{MEDIAN_RESIDUAL_W};
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1181
		}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1182
		$DNCAST{MEDIAN_W}  [$bi] = median(@{$DNCAST{W}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1183
		$DNCAST{MEDIAN_W12}[$bi] = median(@{$DNCAST{W12}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1184
		$DNCAST{MEDIAN_W34}[$bi] = median(@{$DNCAST{W34}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1185
		$DNCAST{MAD_W}	   [$bi] = mad2($DNCAST{MEDIAN_W}[$bi],@{$DNCAST{W}[$bi]});
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1186
	}
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1187
	for (my($bi)=0; $bi<=$#{$UPCAST{ENSEMBLE}}; $bi++) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1188
		for (my($i)=0; $i<@{$UPCAST{W}[$bi]}; $i++) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1189
			$UPCAST{W}  [$bi][$i] -= $LADCP{ENSEMBLE}[$UPCAST{ENSEMBLE}[$bi][$i]]->{MEDIAN_RESIDUAL_W};
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1190
			$UPCAST{W12}[$bi][$i] -= $LADCP{ENSEMBLE}[$UPCAST{ENSEMBLE}[$bi][$i]]->{MEDIAN_RESIDUAL_W};
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1191
			$UPCAST{W34}[$bi][$i] -= $LADCP{ENSEMBLE}[$UPCAST{ENSEMBLE}[$bi][$i]]->{MEDIAN_RESIDUAL_W};
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1192
		}
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1193
		$UPCAST{MEDIAN_W}  [$bi] = median(@{$UPCAST{W}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1194
		$UPCAST{MEDIAN_W12}[$bi] = median(@{$UPCAST{W12}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1195
		$UPCAST{MEDIAN_W34}[$bi] = median(@{$UPCAST{W34}[$bi]});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1196
		$UPCAST{MAD_W}	   [$bi] = mad2($UPCAST{MEDIAN_W}[$bi],@{$UPCAST{W}[$bi]});
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1197
	}
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1198
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1199
} # unless ($opt_q);
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1200
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1201
#-------------------------
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1202
# Output Per-Bin Resiudals
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1203
#-------------------------
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1204
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1205
if (defined($out_BR)) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1206
	my(@dc_nres,@uc_nres,@dc_bres,@uc_bres);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1207
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1208
	progress("Writing per-bin residual data to $out_BR...\n");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1209
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1210
	for ($ens=$firstGoodEns; $ens<$LADCP_atbottom; $ens++) {						# downcast
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1211
		next unless numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1212
		my(@bindepth) = calc_binDepths($ens);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1213
		for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1214
			next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1215
			push(@{$dc_bres[$bin]},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1216
					$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin]
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1217
					- $DNCAST{MEDIAN_W}[$bindepth[$bin]/$opt_o]);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1218
		}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1219
	}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1220
	for ($ens=$LADCP_atbottom; $ens<=$realLastGoodEns; $ens++) {					# upcast 
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1221
		next unless numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1222
		my(@bindepth) = calc_binDepths($ens);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1223
		for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1224
			next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1225
			push(@{$uc_bres[$bin]},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1226
					$LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin]
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1227
					- $UPCAST{MEDIAN_W}[$bindepth[$bin]/$opt_o]);
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1228
		}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1229
	}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1230
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1231
	my($saveParams) = $antsCurParams;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1232
	@antsNewLayout = ('bin','dc_residual','dc_residual.sig','dc_residual.nsamp',
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1233
						   ,'uc_residual','uc_residual.sig','uc_residual.nsamp');
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1234
	open(STDOUT,"$out_BR") || croak("$out_BR: $!\n");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1235
	&antsAddParams('BR_max_bin',max(scalar(@dc_bres),scalar(@uc_bres)));
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1236
	for (my($bin)=0; $bin<max(scalar(@dc_bres),scalar(@uc_bres)); $bin++) {
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1237
		my($dc_avg) = avg(@{$dc_bres[$bin]});
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1238
		my($uc_avg) = avg(@{$uc_bres[$bin]});
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1239
		&antsOut($bin+1,$dc_avg,stddev2($dc_avg,@{$dc_bres[$bin]}),scalar(@{$dc_bres[$bin]}),
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1240
						$uc_avg,stddev2($uc_avg,@{$uc_bres[$bin]}),scalar(@{$uc_bres[$bin]}));
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1241
	}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1242
	&antsOut('EOF'); open(STDOUT,">&2");
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1243
	$antsCurParams = $saveParams;
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1244
}
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1245
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1246
#--------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1247
# Calculate BT-referenced vertical-velocity profile
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1248
#--------------------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1249
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1250
if (defined($water_depth)) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1251
	progress("Calculating BT-referenced vertical velocities\n");
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1252
	calc_BTprof($firstGoodEns,$realLastGoodEns,$water_depth,$sig_water_depth);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1253
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1254
	my($sumSq) = my($n) = 0;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1255
	for (my($bi)=0; $bi<=$#{$BT{MEDIAN_W}}; $bi++) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1256
		next unless defined($BT{MEDIAN_W}[$bi]);
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1257
		next unless ($BT{N_SAMP}[$bi]>=$opt_k && $DNCAST{N_SAMP}[$bi]>=$opt_k && $UPCAST{N_SAMP}[$bi]>=$opt_k);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1258
		$sumSq += ($BT{MEDIAN_W}[$bi] - $DNCAST{MEDIAN_W}[$bi]/2 - $UPCAST{MEDIAN_W}[$bi]/2)**2;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1259
		$n++;
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1260
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1261
	if ($n > 0) {
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1262
		my($rms) = round(sqrt($sumSq/$n),0.001);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1263
		&antsAddParams('BT_rms_w_discrepancy',$rms);
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1264
		progress("\t$rms m/s rms vertical-velocity discrepancy\n");
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1265
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1266
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1267
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1268
#------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1269
# output all samples (-w)
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1270
#------------------------
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1271
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1272
# NB: residual field is calculated with respect to down-/upcast medians in -o-size bins
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1273
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1274
if (defined($out_w)) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1275
	progress("Writing vertical-velocity data to $out_w...\n");
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1276
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1277
	@antsNewLayout = ('ensemble','bin','elapsed','depth','CTD_depth','downcast',
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1278
					  'w','w12','w34','residual','CTD_w','CTD_w_tt','LADCP_w','errvel',
16
29e867b3e070 whoosher version at beginning of FZ1
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 15
diff changeset
  1279
					  'correlation','echo_amplitude','Sv',
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1280
					  'pitch','roll','tilt','heading','3_beam','svel');
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1281
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1282
	open(STDOUT,"$out_w") || croak("$out_w: $!\n");
11
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 10
diff changeset
  1283
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1284
	for ($ens=$firstGoodEns; $ens<$LADCP_atbottom; $ens++) {						# downcast
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1285
	  next unless numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1286
	  my(@bindepth) = calc_binDepths($ens);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1287
	  for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1288
		  next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1289
		  my($bi) = $bindepth[$bin]/$opt_o;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1290
		  &antsOut(
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1291
			  $LADCP{ENSEMBLE}[$ens]->{NUMBER},$bin+1,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1292
			  $CTD{ELAPSED}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1293
			  $bindepth[$bin],$LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},1,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1294
			  $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1295
			  $LADCP{BEAM_COORDINATES} ? $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin] : nan,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1296
			  $LADCP{BEAM_COORDINATES} ? $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin] : nan,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1297
			  $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] - $DNCAST{MEDIAN_W}[$bi],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1298
			  $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1299
			  $CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1300
			  $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_W}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1301
			  $LADCP{ENSEMBLE}[$ens]->{ERRVEL}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1302
			  median(@{$LADCP{ENSEMBLE}[$ens]->{CORRELATION}[$bin]}),
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1303
			  median(@{$LADCP{ENSEMBLE}[$ens]->{ECHO_AMPLITUDE}[$bin]}),
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1304
			  $LADCP{ENSEMBLE}[$ens]->{SV}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1305
			  $LADCP{ENSEMBLE}[$ens]->{PITCH},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1306
			  $LADCP{ENSEMBLE}[$ens]->{ROLL},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1307
			  $LADCP{ENSEMBLE}[$ens]->{TILT},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1308
			  $LADCP{ENSEMBLE}[$ens]->{HEADING},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1309
			  (defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][0]) +			  # only works for beam coords
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1310
			   defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][1]) +
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1311
			   defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][2]) +
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1312
			   defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][3])) < 4 ? 1 : 0,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1313
			  $CTD{SVEL}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1314
		  );
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1315
	  } # for $bin
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1316
	} # for $ens
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1317
  
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1318
	for ($ens=$LADCP_atbottom; $ens<=$realLastGoodEns; $ens++) {					  # upcast 
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1319
	  next unless numberp($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1320
	  my(@bindepth) = calc_binDepths($ens);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1321
	  for ($bin=$LADCP_firstBin-1; $bin<=$LADCP_lastBin-1; $bin++) {
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1322
		  next unless numberp($LADCP{ENSEMBLE}[$ens]->{W}[$bin]);
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1323
		  my($bi) = $bindepth[$bin]/$opt_o;
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1324
		  &antsOut(
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1325
			  $LADCP{ENSEMBLE}[$ens]->{NUMBER},$bin+1,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1326
			  $CTD{ELAPSED}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1327
			  $bindepth[$bin],$LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},0,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1328
			  $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1329
			  $LADCP{BEAM_COORDINATES} ? $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W12}[$bin] : nan,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1330
			  $LADCP{BEAM_COORDINATES} ? $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W34}[$bin] : nan,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1331
			  $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_OCEAN_W}[$bin] - $UPCAST{MEDIAN_W}[$bi],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1332
			  $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1333
			  $CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1334
			  $LADCP{ENSEMBLE}[$ens]->{SSCORRECTED_W}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1335
			  $LADCP{ENSEMBLE}[$ens]->{ERRVEL}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1336
			  median(@{$LADCP{ENSEMBLE}[$ens]->{CORRELATION}[$bin]}),
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1337
			  median(@{$LADCP{ENSEMBLE}[$ens]->{ECHO_AMPLITUDE}[$bin]}),
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1338
			  $LADCP{ENSEMBLE}[$ens]->{SV}[$bin],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1339
			  $LADCP{ENSEMBLE}[$ens]->{PITCH},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1340
			  $LADCP{ENSEMBLE}[$ens]->{ROLL},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1341
			  $LADCP{ENSEMBLE}[$ens]->{TILT},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1342
			  $LADCP{ENSEMBLE}[$ens]->{HEADING},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1343
			  (defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][0]) +			  # only works for beam coords
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1344
			   defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][1]) +
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1345
			   defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][2]) +
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1346
			   defined($LADCP{ENSEMBLE}[$ens]->{VELOCITY}[$bin][3])) < 4 ? 1 : 0,
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1347
			  $CTD{SVEL}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1348
		  );
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1349
	  } # for $bin
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1350
	} # for $ens
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1351
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1352
	&antsOut('EOF'); open(STDOUT,">&2");
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1353
}
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1354
	
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1355
#----------------------------
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1356
# Output depth-binned profile
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1357
#----------------------------
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1358
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1359
if (defined($out_profile)) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1360
	progress("Writing vertical-velocity profiles to <$out_profile>...\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1361
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1362
	@antsNewLayout = ('depth','dc_depth','dc_elapsed','dc_w','dc_w.mad','dc_w.nsamp','dc_w12','dc_w34',
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1363
							  'uc_depth','uc_elapsed','uc_w','uc_w.mad','uc_w.nsamp','uc_w12','uc_w34',
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1364
							  'elapsed','w','w.mad','w.nsamp',
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1365
	                          'BT_w','BT_w.mad','BT_w.nsamp');
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1366
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1367
	open(STDOUT,"$out_profile") || croak("$out_profile: $!\n");
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1368
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1369
	for (my($bi)=0; $bi<=max($#{$DNCAST{ENSEMBLE}},$#{$UPCAST{ENSEMBLE}},$#{$BT{NSAMP}}); $bi++) {
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1370
		&antsOut(($bi+0.5)*$opt_o,					# nominal depth
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1371
				 $DNCAST{MEAN_DEPTH}[$bi],$DNCAST{MEAN_ELAPSED}[$bi],
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1372
				 $DNCAST{N_SAMP}[$bi]>=$opt_k?$DNCAST{MEDIAN_W}[$bi]:nan,
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1373
				 $DNCAST{MAD_W}[$bi],$DNCAST{N_SAMP}[$bi],
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1374
				 $DNCAST{MEDIAN_W12}[$bi],$DNCAST{MEDIAN_W34}[$bi],
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1375
				 $UPCAST{MEAN_DEPTH}[$bi],$UPCAST{MEAN_ELAPSED}[$bi],
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1376
				 $UPCAST{N_SAMP}[$bi]>=$opt_k?$UPCAST{MEDIAN_W}[$bi]:nan,
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1377
				 $UPCAST{MAD_W}[$bi],$UPCAST{N_SAMP}[$bi],
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1378
				 $UPCAST{MEDIAN_W12}[$bi],$UPCAST{MEDIAN_W34}[$bi],
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1379
				 $DNCAST{MEAN_ELAPSED}[$bi]/2+$UPCAST{MEAN_ELAPSED}[$bi]/2,
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1380
				 $DNCAST{N_SAMP}[$bi]+$UPCAST{N_SAMP}[$bi]>=$opt_k ?
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1381
					($DNCAST{MEDIAN_W}[$bi]*$DNCAST{N_SAMP}[$bi]+$UPCAST{MEDIAN_W}[$bi]*$UPCAST{N_SAMP}[$bi]) / ($DNCAST{N_SAMP}[$bi]+$UPCAST{N_SAMP}[$bi]) :
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1382
					nan,
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1383
				 $DNCAST{N_SAMP}[$bi]+$UPCAST{N_SAMP}[$bi]>=$opt_k ?
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1384
					 ($DNCAST{MAD_W}[$bi]*$DNCAST{N_SAMP}[$bi]+$UPCAST{MAD_W}[$bi]*$UPCAST{N_SAMP}[$bi]) / ($DNCAST{N_SAMP}[$bi]+$UPCAST{N_SAMP}[$bi]) :
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1385
					 nan,
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1386
				 $DNCAST{N_SAMP}[$bi]+$UPCAST{N_SAMP}[$bi],
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1387
				 $BT{N_SAMP}[$bi]>=$opt_k?$BT{MEDIAN_W}[$bi]:nan,
2
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1388
				 $BT{MAD_W}[$bi],$BT{N_SAMP}[$bi]
a077ea2a9f36 post 2011_IWISE
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 1
diff changeset
  1389
		);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1390
	}
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1391
	&antsOut('EOF'); open(STDOUT,">&2");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1392
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1393
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1394
#--------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1395
# write time-series output if requested
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1396
#--------------------------------------
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1397
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1398
if (defined($out_timeseries)) {
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1399
	progress("Writing time-series data to <$out_timeseries>...\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1400
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1401
	@antsNewLayout = ('ens','elapsed','downcast',
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1402
					  'depth','xducer_sound_speed','pitch','gimbal_pitch','roll','tilt','heading',
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1403
					  'CTD_w','CTD_w_tt','LADCP_reflr_w','LADCP_reflr_w.sig',
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1404
					  'reflr_ocean_w');
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1405
	open(STDOUT,"$out_timeseries") || croak("$out_timeseries: $!\n");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1406
	 
4
e681262d0fd7 yay! first version I am really happy with. With plots 'n all.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 3
diff changeset
  1407
	for ($ens=$firstGoodEns; $ens<=$realLastGoodEns; $ens++) {
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1408
		next unless defined($LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH});
3
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1409
		my($reflr_oc_w) = defined($LADCP{ENSEMBLE}[$ens]->{REFLR_W})
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1410
			   		    ? $LADCP{ENSEMBLE}[$ens]->{REFLR_W} - $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}]
9c021fdea1ff Before replacing command-line options by default variables.
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 2
diff changeset
  1411
			   		    : undef;
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1412
		&antsOut($LADCP{ENSEMBLE}[$ens]->{NUMBER},
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1413
				 $CTD{ELAPSED}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1414
				 ($ens < $LADCP_atbottom) ? 1 : 0,
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1415
				 $LADCP{ENSEMBLE}[$ens]->{CTD_DEPTH},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1416
				 $CTD{SVEL}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1417
				 $LADCP{ENSEMBLE}[$ens]->{PITCH},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1418
				 $LADCP{ENSEMBLE}[$ens]->{GIMBAL_PITCH},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1419
				 $LADCP{ENSEMBLE}[$ens]->{ROLL},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1420
				 $LADCP{ENSEMBLE}[$ens]->{TILT},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1421
				 $LADCP{ENSEMBLE}[$ens]->{HEADING},
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1422
				 $CTD{W}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1423
				 $CTD{W_tt}[$LADCP{ENSEMBLE}[$ens]->{CTD_SCAN}],
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1424
				 $LADCP{ENSEMBLE}[$ens]->{REFLR_W},
13
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1425
				 $LADCP{ENSEMBLE}[$ens]->{REFLR_W_STDDEV},
2788bf1bf1de after DIMES US5
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents: 12
diff changeset
  1426
				 $reflr_oc_w);
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1427
	}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1428
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1429
	&antsOut('EOF'); open(STDOUT,">&2");
0
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1430
}
3365828b1004 after DIMES UK2
A.M. Thurnherr <ant@ldeo.columbia.edu>
parents:
diff changeset
  1431
5
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1432
system("{ sleep 30; ./PostProcess.sh $out_basename $RUN $data_subdir $plot_subdir $log_subdir; }&")
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1433
	if (-x 'PostProcess.sh');
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1434
509cc9966b68 ======================================================================
A.M. Thurnherr <athurnherr@yahoo.com>
parents: 4
diff changeset
  1435
exit(0);